SHOGoiN Cell Methylome: GSM2481624

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481624


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M97Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.9749 0.0000
2 ENSG00000257279 novel transcript 2.3324 0.0000
3 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 2.3219 0.0000
4 ENSG00000250250 novel transcript 2.3219 0.0000
5 ENSG00000070269 TMEM260 transmembrane protein 260 2.0000 0.0241
6 ENSG00000113845 TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 2.0000 0.0006
7 ENSG00000132109 TRIM21 tripartite motif containing 21 2.0000 0.0000
8 ENSG00000198826 ARHGAP11A Rho GTPase activating protein 11A 2.0000 0.0000
9 ENSG00000199420 RN7SKP170 RN7SK pseudogene 170 2.0000 0.0241
10 ENSG00000199535 RNA5SP305 RNA, 5S ribosomal pseudogene 305 2.0000 0.0241

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000231576 MTCO2P20 MT-CO2 pseudogene 20 -1.5850 0.5845
63340 ENSG00000231541 RPS6P2 ribosomal protein S6 pseudogene 2 -1.5850 0.5845
63339 ENSG00000231533 novel transcript -1.5850 1.0000
63338 ENSG00000231428 LINC00396 long intergenic non-protein coding RNA 396 -1.5850 0.5845
63337 ENSG00000231327 LINC01816 long intergenic non-protein coding RNA 1816 -1.5850 0.0241
63336 ENSG00000231238 LINC00349 long intergenic non-protein coding RNA 349 -1.5850 1.0000
63335 ENSG00000231112 MTHFD2P3 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 3 -1.5850 0.1151
63334 ENSG00000231100 amyloid P component, serum (APCS) pseudogene -1.5850 0.5845
63333 ENSG00000230731 novel transcript -1.5850 1.0000
63332 ENSG00000230639 VN1R36P vomeronasal 1 receptor 36 pseudogene -1.5850 0.0727

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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