Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481624

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481624


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M97Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.9749 0.0000
2 ENSG00000257279 novel transcript 2.3324 0.0000
3 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 2.3219 0.0000
4 ENSG00000250250 uncharacterized LOC101929472 2.3219 0.0000
5 ENSG00000070269 TMEM260 transmembrane protein 260 2.0000 0.0241
6 ENSG00000113845 TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 2.0000 0.0006
7 ENSG00000132109 TRIM21 tripartite motif containing 21 2.0000 0.0000
8 ENSG00000198826 ARHGAP11A Rho GTPase activating protein 11A 2.0000 0.0000
9 ENSG00000199420 RN7SKP170 RN7SK pseudogene 170 2.0000 0.0241
10 ENSG00000199535 RNA5SP305 RNA, 5S ribosomal pseudogene 305 2.0000 0.0241

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000118733 OLFM3 olfactomedin 3 -1.5850 0.1151
63127 ENSG00000117400 MPL MPL proto-oncogene, thrombopoietin receptor -1.5850 1.0000
63126 ENSG00000117036 ETV3 ETS variant transcription factor 3 -1.5850 0.0096
63125 ENSG00000117010 ZNF684 zinc finger protein 684 -1.5850 0.5845
63124 ENSG00000116668 SWT1 SWT1 RNA endoribonuclease homolog -1.5850 0.0007
63123 ENSG00000115392 FANCL FA complementation group L -1.5850 0.0000
63122 ENSG00000115368 WDR75 WD repeat domain 75 -1.5850 0.0004
63121 ENSG00000112539 C6orf118 chromosome 6 open reading frame 118 -1.5850 0.1913
63120 ENSG00000112343 TRIM38 tripartite motif containing 38 -1.5850 0.0727
63119 ENSG00000111780 novel protein -1.5850 0.0727

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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