Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481625

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481625


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M98Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 3.7875 0.0000
2 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.7875 0.0000
3 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.6870 0.0000
4 ENSG00000105339 DENND3 DENN domain containing 3 2.3219 0.0000
5 ENSG00000100346 CACNA1I calcium voltage-gated channel subunit alpha1 I 2.0000 0.0003
6 ENSG00000111726 CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 2.0000 0.0000
7 ENSG00000136732 GYPC glycophorin C (Gerbich blood group) 2.0000 0.0000
8 ENSG00000231898 MYO3B-AS1 MYO3B antisense RNA 1 2.0000 0.0003
9 ENSG00000240143 novel transcript 2.0000 0.0003
10 ENSG00000260480 C2orf69P4 chromosome 2 open reading frame 69 pseudogene 4 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000137207 YIPF3 Yip1 domain family member 3 -1.0000 1.0000
63127 ENSG00000137075 RNF38 ring finger protein 38 -1.0000 0.4088
63126 ENSG00000136950 ARPC5L actin related protein 2/3 complex subunit 5 like -1.0000 1.0000
63125 ENSG00000136937 NCBP1 nuclear cap binding protein subunit 1 -1.0000 1.0000
63124 ENSG00000136925 TSTD2 thiosulfate sulfurtransferase like domain containing 2 -1.0000 1.0000
63123 ENSG00000136840 ST6GALNAC4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 -1.0000 1.0000
63122 ENSG00000136720 HS6ST1 heparan sulfate 6-O-sulfotransferase 1 -1.0000 1.0000
63121 ENSG00000136699 SMPD4 sphingomyelin phosphodiesterase 4 -1.0000 0.6241
63120 ENSG00000136695 IL36RN interleukin 36 receptor antagonist -1.0000 1.0000
63119 ENSG00000136560 TANK TRAF family member associated NFKB activator -1.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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