SHOGoiN Cell Methylome: GSM2481625

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481625


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M98Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 3.7875 0.0000
2 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.7875 0.0000
3 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 2.6870 0.0000
4 ENSG00000105339 DENND3 DENN domain containing 3 2.3219 0.0000
5 ENSG00000100346 CACNA1I calcium voltage-gated channel subunit alpha1 I 2.0000 0.0003
6 ENSG00000111726 CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 2.0000 0.0000
7 ENSG00000136732 GYPC glycophorin C (Gerbich blood group) 2.0000 0.0000
8 ENSG00000231898 MYO3B-AS1 MYO3B antisense RNA 1 2.0000 0.0003
9 ENSG00000240143 novel transcript 2.0000 0.0003
10 ENSG00000260480 C2orf69P4 chromosome 2 open reading frame 69 pseudogene 4 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000186998 EMID1 EMI domain containing 1 -1.0000 1.0000
63340 ENSG00000186976 EFCAB6 EF-hand calcium binding domain 6 -1.0000 1.0000
63339 ENSG00000186960 LINC01551 long intergenic non-protein coding RNA 1551 -1.0000 1.0000
63338 ENSG00000186766 FOXI2 forkhead box I2 -1.0000 1.0000
63337 ENSG00000186010 NDUFA13 NADH:ubiquinone oxidoreductase subunit A13 -1.0000 0.6194
63336 ENSG00000185960 SHOX short stature homeobox -1.0000 1.0000
63335 ENSG00000185920 PTCH1 patched 1 -1.0000 1.0000
63334 ENSG00000185803 SLC52A2 solute carrier family 52 member 2 -1.0000 1.0000
63333 ENSG00000185787 MORF4L1 mortality factor 4 like 1 -1.0000 1.0000
63332 ENSG00000184956 MUC6 mucin 6, oligomeric mucus/gel-forming -1.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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