Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481626
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481626
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M99
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000203875
SNHG5
small nucleolar RNA host gene 5
3.8307
0.0000
2
ENSG00000275072
SNORD50B
small nucleolar RNA, C/D box 50B
3.8307
0.0000
3
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
3.6296
0.0000
4
ENSG00000264940
SNORD3C
small nucleolar RNA, C/D box 3C
3.6092
0.0000
5
ENSG00000251340
MTCYBP35
MT-CYB pseudogene 35
3.3524
0.0000
6
ENSG00000232184
novel transcript
2.5850
0.0008
7
ENSG00000220937
HNRNPA1P41
heterogeneous nuclear ribonucleoprotein A1 pseudogene 41
2.3219
0.0032
8
ENSG00000226059
HMGB3P20
high mobility group box 3 pseudogene 20
2.3219
0.0000
9
ENSG00000274116
zinc finger protein 511 (ZNF511) pseudogene
2.3219
0.0000
10
ENSG00000094631
HDAC6
histone deacetylase 6
2.0000
0.0134
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000233252
CRIP1P1
cysteine rich protein 1 pseudogene 1
-1.5850
0.0044
63127
ENSG00000233232
NPIPB7
nuclear pore complex interacting protein family member B7
-1.5850
0.3467
63126
ENSG00000233225
SSBL3P1
SSBP3 pseudogene 1
-1.5850
0.0183
63125
ENSG00000233093
LINC00892
long intergenic non-protein coding RNA 892
-1.5850
0.1308
63124
ENSG00000232862
implantation-associated protein (DKFZp564K142) pseudogene
-1.5850
0.0112
63123
ENSG00000232791
OR11I1P
olfactory receptor family 11 subfamily I member 1 pseudogene
-1.5850
0.3467
63122
ENSG00000232717
TRIM51JP
tripartite motif-containing 51J, pseudogene
-1.5850
1.0000
63121
ENSG00000232714
MTND3P8
MT-ND3 pseudogene 8
-1.5850
0.1308
63120
ENSG00000232675
novel transcript, antisense to SLC24A3
-1.5850
1.0000
63119
ENSG00000232579
MTCO1P27
MT-CO1 pseudogene 27
-1.5850
0.2115
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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