SHOGoiN Cell Methylome: GSM2481626

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481626


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M99Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 3.8307 0.0000
2 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.8307 0.0000
3 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 3.6296 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 3.6092 0.0000
5 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 3.3524 0.0000
6 ENSG00000232184 novel transcript 2.5850 0.0008
7 ENSG00000220937 HNRNPA1P41 heterogeneous nuclear ribonucleoprotein A1 pseudogene 41 2.3219 0.0032
8 ENSG00000226059 HMGB3P20 high mobility group box 3 pseudogene 20 2.3219 0.0000
9 ENSG00000274116 zinc finger protein 511 (ZNF511) pseudogene 2.3219 0.0000
10 ENSG00000094631 HDAC6 histone deacetylase 6 2.0000 0.0134

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000255260 novel transcript -1.5850 0.5789
63340 ENSG00000255236 novel transcript -1.5850 0.0000
63339 ENSG00000255230 novel pseudogene (C11orf2) -1.5850 0.0018
63338 ENSG00000255165 novel transcript -1.5850 0.0000
63337 ENSG00000255123 MTND5P21 MT-ND5 pseudogene 21 -1.5850 0.5789
63336 ENSG00000255020 novel transcript, antisense to TDH -1.5850 0.0000
63335 ENSG00000254884 PRR13P2 proline rich 13 pseudogene 2 -1.5850 0.3467
63334 ENSG00000254800 tripartite motif-containing pseudogene -1.5850 1.0000
63333 ENSG00000254779 EGLN1P1 egl-9 family hypoxia inducible factor 1 pseudogene 1 -1.5850 0.5789
63332 ENSG00000254751 TRIM64DP tripartite motif containing 64D, pseudogene -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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