Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481626

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481626


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M99Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 3.8307 0.0000
2 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.8307 0.0000
3 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 3.6296 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 3.6092 0.0000
5 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 3.3524 0.0000
6 ENSG00000232184 novel transcript 2.5850 0.0008
7 ENSG00000220937 HNRNPA1P41 heterogeneous nuclear ribonucleoprotein A1 pseudogene 41 2.3219 0.0032
8 ENSG00000226059 HMGB3P20 high mobility group box 3 pseudogene 20 2.3219 0.0000
9 ENSG00000274116 zinc finger protein 511 (ZNF511) pseudogene 2.3219 0.0000
10 ENSG00000094631 HDAC6 histone deacetylase 6 2.0000 0.0134

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000233252 CRIP1P1 cysteine rich protein 1 pseudogene 1 -1.5850 0.0044
63127 ENSG00000233232 NPIPB7 nuclear pore complex interacting protein family member B7 -1.5850 0.3467
63126 ENSG00000233225 SSBL3P1 SSBP3 pseudogene 1 -1.5850 0.0183
63125 ENSG00000233093 LINC00892 long intergenic non-protein coding RNA 892 -1.5850 0.1308
63124 ENSG00000232862 implantation-associated protein (DKFZp564K142) pseudogene -1.5850 0.0112
63123 ENSG00000232791 OR11I1P olfactory receptor family 11 subfamily I member 1 pseudogene -1.5850 0.3467
63122 ENSG00000232717 TRIM51JP tripartite motif-containing 51J, pseudogene -1.5850 1.0000
63121 ENSG00000232714 MTND3P8 MT-ND3 pseudogene 8 -1.5850 0.1308
63120 ENSG00000232675 novel transcript, antisense to SLC24A3 -1.5850 1.0000
63119 ENSG00000232579 MTCO1P27 MT-CO1 pseudogene 27 -1.5850 0.2115

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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