SHOGoiN Cell Methylome: GSM2481626
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481626 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M99 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000203875 | SNHG5 | small nucleolar RNA host gene 5 | 3.8307 | 0.0000 |
| 2 | ENSG00000275072 | SNORD50B | small nucleolar RNA, C/D box 50B | 3.8307 | 0.0000 |
| 3 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 3.6296 | 0.0000 |
| 4 | ENSG00000264940 | SNORD3C | small nucleolar RNA, C/D box 3C | 3.6092 | 0.0000 |
| 5 | ENSG00000251340 | MTCYBP35 | MT-CYB pseudogene 35 | 3.3524 | 0.0000 |
| 6 | ENSG00000232184 | novel transcript | 2.5850 | 0.0008 | |
| 7 | ENSG00000220937 | HNRNPA1P41 | heterogeneous nuclear ribonucleoprotein A1 pseudogene 41 | 2.3219 | 0.0032 |
| 8 | ENSG00000226059 | HMGB3P20 | high mobility group box 3 pseudogene 20 | 2.3219 | 0.0000 |
| 9 | ENSG00000274116 | zinc finger protein 511 (ZNF511) pseudogene | 2.3219 | 0.0000 | |
| 10 | ENSG00000094631 | HDAC6 | histone deacetylase 6 | 2.0000 | 0.0134 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000255260 | novel transcript | -1.5850 | 0.5789 | |
| 63340 | ENSG00000255236 | novel transcript | -1.5850 | 0.0000 | |
| 63339 | ENSG00000255230 | novel pseudogene (C11orf2) | -1.5850 | 0.0018 | |
| 63338 | ENSG00000255165 | novel transcript | -1.5850 | 0.0000 | |
| 63337 | ENSG00000255123 | MTND5P21 | MT-ND5 pseudogene 21 | -1.5850 | 0.5789 |
| 63336 | ENSG00000255020 | novel transcript, antisense to TDH | -1.5850 | 0.0000 | |
| 63335 | ENSG00000254884 | PRR13P2 | proline rich 13 pseudogene 2 | -1.5850 | 0.3467 |
| 63334 | ENSG00000254800 | tripartite motif-containing pseudogene | -1.5850 | 1.0000 | |
| 63333 | ENSG00000254779 | EGLN1P1 | egl-9 family hypoxia inducible factor 1 pseudogene 1 | -1.5850 | 0.5789 |
| 63332 | ENSG00000254751 | TRIM64DP | tripartite motif containing 64D, pseudogene | -1.5850 | 1.0000 |
