Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481626

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481626 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M99	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000203875	SNHG5	small nucleolar RNA host gene 5	3.8307	0.0000
2	ENSG00000275072	SNORD50B	small nucleolar RNA, C/D box 50B	3.8307	0.0000
3	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	3.6296	0.0000
4	ENSG00000264940	SNORD3C	small nucleolar RNA, C/D box 3C	3.6092	0.0000
5	ENSG00000251340	MTCYBP35	MT-CYB pseudogene 35	3.3524	0.0000
6	ENSG00000232184		novel transcript	2.5850	0.0008
7	ENSG00000220937	HNRNPA1P41	heterogeneous nuclear ribonucleoprotein A1 pseudogene 41	2.3219	0.0032
8	ENSG00000226059	HMGB3P20	high mobility group box 3 pseudogene 20	2.3219	0.0000
9	ENSG00000274116		zinc finger protein 511 (ZNF511) pseudogene	2.3219	0.0000
10	ENSG00000094631	HDAC6	histone deacetylase 6	2.0000	0.0134

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000233252	CRIP1P1	cysteine rich protein 1 pseudogene 1	-1.5850	0.0044
63127	ENSG00000233232	NPIPB7	nuclear pore complex interacting protein family member B7	-1.5850	0.3467
63126	ENSG00000233225	SSBL3P1	SSBP3 pseudogene 1	-1.5850	0.0183
63125	ENSG00000233093	LINC00892	long intergenic non-protein coding RNA 892	-1.5850	0.1308
63124	ENSG00000232862		implantation-associated protein (DKFZp564K142) pseudogene	-1.5850	0.0112
63123	ENSG00000232791	OR11I1P	olfactory receptor family 11 subfamily I member 1 pseudogene	-1.5850	0.3467
63122	ENSG00000232717	TRIM51JP	tripartite motif-containing 51J, pseudogene	-1.5850	1.0000
63121	ENSG00000232714	MTND3P8	MT-ND3 pseudogene 8	-1.5850	0.1308
63120	ENSG00000232675		novel transcript, antisense to SLC24A3	-1.5850	1.0000
63119	ENSG00000232579	MTCO1P27	MT-CO1 pseudogene 27	-1.5850	0.2115

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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