Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481627

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481627 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M100	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000251340	MTCYBP35	MT-CYB pseudogene 35	3.8135	0.0000
2	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	3.2788	0.0000
3	ENSG00000203875	SNHG5	small nucleolar RNA host gene 5	3.0539	0.0000
4	ENSG00000275072	SNORD50B	small nucleolar RNA, C/D box 50B	3.0539	0.0000
5	ENSG00000280288		TEC	2.5850	0.0000
6	ENSG00000117507	FMO6P	flavin containing dimethylaniline monoxygenase 6, pseudogene	2.3219	0.0001
7	ENSG00000152642	GPD1L	glycerol-3-phosphate dehydrogenase 1 like	2.3219	0.0000
8	ENSG00000179002	TAS1R2	taste 1 receptor member 2	2.3219	0.0000
9	ENSG00000197124	ZNF682	zinc finger protein 682	2.3219	0.0090
10	ENSG00000199319	RN7SKP25	RN7SK pseudogene 25	2.3219	0.0090

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000226235	LEMD1-AS1	LEMD1 antisense RNA 1	-1.5850	0.3190
63127	ENSG00000226047		novel transcript	-1.5850	1.0000
63126	ENSG00000226036		riboflavin kinase pseudogene	-1.5850	1.0000
63125	ENSG00000225823	RPL7P45	ribosomal protein L7 pseudogene 45	-1.5850	1.0000
63124	ENSG00000225801	RABEPKP1	Rab9 effector protein with kelch motifs pseudogene 1	-1.5850	0.3190
63123	ENSG00000225762	LINC01389	long intergenic non-protein coding RNA 1389	-1.5850	0.3190
63122	ENSG00000225610		novel transcript, antisense to INO80D	-1.5850	1.0000
63121	ENSG00000225555		novel transcript	-1.5850	1.0000
63120	ENSG00000225513		ribosomal protein L29 (RPL29) pseudogene	-1.5850	0.1171
63119	ENSG00000225497	KCNMA1-AS2	KCNMA1 antisense RNA 2	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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