SHOGoiN Cell Methylome: GSM2481627
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481627 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M100 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000251340 | MTCYBP35 | MT-CYB pseudogene 35 | 3.8135 | 0.0000 |
| 2 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 3.2788 | 0.0000 |
| 3 | ENSG00000203875 | SNHG5 | small nucleolar RNA host gene 5 | 3.0539 | 0.0000 |
| 4 | ENSG00000275072 | SNORD50B | small nucleolar RNA, C/D box 50B | 3.0539 | 0.0000 |
| 5 | ENSG00000280288 | TEC | 2.5850 | 0.0000 | |
| 6 | ENSG00000117507 | FMO6P | flavin containing monooxygenase 6, pseudogene | 2.3219 | 0.0001 |
| 7 | ENSG00000152642 | GPD1L | glycerol-3-phosphate dehydrogenase 1 like | 2.3219 | 0.0000 |
| 8 | ENSG00000179002 | TAS1R2 | taste 1 receptor member 2 | 2.3219 | 0.0000 |
| 9 | ENSG00000197124 | ZNF682 | zinc finger protein 682 | 2.3219 | 0.0090 |
| 10 | ENSG00000199319 | RN7SKP25 | RN7SK pseudogene 25 | 2.3219 | 0.0090 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000253465 | IGHVIV-44-1 | immunoglobulin heavy variable (IV)-44-1 (pseudogene) | -1.5850 | 0.0375 |
| 63340 | ENSG00000253376 | novel transcript | -1.5850 | 0.3190 | |
| 63339 | ENSG00000253288 | uncharacterized LOC401478 | -1.5850 | 1.0000 | |
| 63338 | ENSG00000253024 | RNU6-1238P | RNA, U6 small nuclear 1238, pseudogene | -1.5850 | 0.0375 |
| 63337 | ENSG00000253003 | RNU6-1261P | RNA, U6 small nuclear 1261, pseudogene | -1.5850 | 0.1171 |
| 63336 | ENSG00000252614 | RNU6-807P | RNA, U6 small nuclear 807, pseudogene | -1.5850 | 0.3190 |
| 63335 | ENSG00000252612 | NA | -1.5850 | 0.0010 | |
| 63334 | ENSG00000252604 | RNU2-44P | RNA, U2 small nuclear 44, pseudogene | -1.5850 | 0.0000 |
| 63333 | ENSG00000252533 | RNU6-572P | RNA, U6 small nuclear 572, pseudogene | -1.5850 | 0.1868 |
| 63332 | ENSG00000252452 | RNU6-107P | RNA, U6 small nuclear 107, pseudogene | -1.5850 | 1.0000 |
