Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481627

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481627


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M100Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 3.8135 0.0000
2 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 3.2788 0.0000
3 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 3.0539 0.0000
4 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.0539 0.0000
5 ENSG00000280288 TEC 2.5850 0.0000
6 ENSG00000117507 FMO6P flavin containing dimethylaniline monoxygenase 6, pseudogene 2.3219 0.0001
7 ENSG00000152642 GPD1L glycerol-3-phosphate dehydrogenase 1 like 2.3219 0.0000
8 ENSG00000179002 TAS1R2 taste 1 receptor member 2 2.3219 0.0000
9 ENSG00000197124 ZNF682 zinc finger protein 682 2.3219 0.0090
10 ENSG00000199319 RN7SKP25 RN7SK pseudogene 25 2.3219 0.0090

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000226235 LEMD1-AS1 LEMD1 antisense RNA 1 -1.5850 0.3190
63127 ENSG00000226047 novel transcript -1.5850 1.0000
63126 ENSG00000226036 riboflavin kinase pseudogene -1.5850 1.0000
63125 ENSG00000225823 RPL7P45 ribosomal protein L7 pseudogene 45 -1.5850 1.0000
63124 ENSG00000225801 RABEPKP1 Rab9 effector protein with kelch motifs pseudogene 1 -1.5850 0.3190
63123 ENSG00000225762 LINC01389 long intergenic non-protein coding RNA 1389 -1.5850 0.3190
63122 ENSG00000225610 novel transcript, antisense to INO80D -1.5850 1.0000
63121 ENSG00000225555 novel transcript -1.5850 1.0000
63120 ENSG00000225513 ribosomal protein L29 (RPL29) pseudogene -1.5850 0.1171
63119 ENSG00000225497 KCNMA1-AS2 KCNMA1 antisense RNA 2 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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