Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481627
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481627
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M100
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000251340
MTCYBP35
MT-CYB pseudogene 35
3.8135
0.0000
2
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
3.2788
0.0000
3
ENSG00000203875
SNHG5
small nucleolar RNA host gene 5
3.0539
0.0000
4
ENSG00000275072
SNORD50B
small nucleolar RNA, C/D box 50B
3.0539
0.0000
5
ENSG00000280288
TEC
2.5850
0.0000
6
ENSG00000117507
FMO6P
flavin containing dimethylaniline monoxygenase 6, pseudogene
2.3219
0.0001
7
ENSG00000152642
GPD1L
glycerol-3-phosphate dehydrogenase 1 like
2.3219
0.0000
8
ENSG00000179002
TAS1R2
taste 1 receptor member 2
2.3219
0.0000
9
ENSG00000197124
ZNF682
zinc finger protein 682
2.3219
0.0090
10
ENSG00000199319
RN7SKP25
RN7SK pseudogene 25
2.3219
0.0090
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000226235
LEMD1-AS1
LEMD1 antisense RNA 1
-1.5850
0.3190
63127
ENSG00000226047
novel transcript
-1.5850
1.0000
63126
ENSG00000226036
riboflavin kinase pseudogene
-1.5850
1.0000
63125
ENSG00000225823
RPL7P45
ribosomal protein L7 pseudogene 45
-1.5850
1.0000
63124
ENSG00000225801
RABEPKP1
Rab9 effector protein with kelch motifs pseudogene 1
-1.5850
0.3190
63123
ENSG00000225762
LINC01389
long intergenic non-protein coding RNA 1389
-1.5850
0.3190
63122
ENSG00000225610
novel transcript, antisense to INO80D
-1.5850
1.0000
63121
ENSG00000225555
novel transcript
-1.5850
1.0000
63120
ENSG00000225513
ribosomal protein L29 (RPL29) pseudogene
-1.5850
0.1171
63119
ENSG00000225497
KCNMA1-AS2
KCNMA1 antisense RNA 2
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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