SHOGoiN Cell Methylome: GSM2481628

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481628


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M101Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276094 NA 3.0000 0.0000
2 ENSG00000276562 RN7SL565P RNA, 7SL, cytoplasmic 565, pseudogene 3.0000 0.0000
3 ENSG00000277340 ribosomal protein L10 (RPL10) pseudogene 3.0000 0.0000
4 ENSG00000226042 CDY10P chromodomain Y-linked 10 pseudogene 2.9122 0.0000
5 ENSG00000197416 FABP12 fatty acid binding protein 12 2.8074 0.0005
6 ENSG00000236032 OR5H14 olfactory receptor family 5 subfamily H member 14 2.8074 0.0000
7 ENSG00000249225 novel transcript, antisense to OR5H1, OR5H14, OR5H15 2.8074 0.0000
8 ENSG00000255323 LINC01495 long intergenic non-protein coding RNA 1495 2.8074 0.0005
9 ENSG00000201640 RN7SKP28 RN7SK pseudogene 28 2.5850 0.0019
10 ENSG00000217878 pseudogene similar to zinc finger proteins 2.5850 0.0019

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000273125 LINC01990 long intergenic non-protein coding RNA 1990 -1.9655 0.0000
63340 ENSG00000265368 MIR4476 microRNA 4476 -1.9651 0.0000
63339 ENSG00000106031 HOXA13 homeobox A13 -1.9643 0.0000
63338 ENSG00000246366 LACTB2-AS1 LACTB2 antisense RNA 1 -1.9634 0.0000
63337 ENSG00000185608 MRPL40 mitochondrial ribosomal protein L40 -1.9611 0.0000
63336 ENSG00000140600 SH3GL3 SH3 domain containing GRB2 like 3, endophilin A3 -1.9609 0.0000
63335 ENSG00000121274 TENT4B terminal nucleotidyltransferase 4B -1.9603 0.0000
63334 ENSG00000228426 novel transcript -1.9602 0.0000
63333 ENSG00000283183 novel transcript -1.9598 0.0000
63332 ENSG00000163251 FZD5 frizzled class receptor 5 -1.9585 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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