SHOGoiN Cell Methylome: GSM2481628
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481628 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M101 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000276094 | NA | 3.0000 | 0.0000 | |
| 2 | ENSG00000276562 | RN7SL565P | RNA, 7SL, cytoplasmic 565, pseudogene | 3.0000 | 0.0000 |
| 3 | ENSG00000277340 | ribosomal protein L10 (RPL10) pseudogene | 3.0000 | 0.0000 | |
| 4 | ENSG00000226042 | CDY10P | chromodomain Y-linked 10 pseudogene | 2.9122 | 0.0000 |
| 5 | ENSG00000197416 | FABP12 | fatty acid binding protein 12 | 2.8074 | 0.0005 |
| 6 | ENSG00000236032 | OR5H14 | olfactory receptor family 5 subfamily H member 14 | 2.8074 | 0.0000 |
| 7 | ENSG00000249225 | novel transcript, antisense to OR5H1, OR5H14, OR5H15 | 2.8074 | 0.0000 | |
| 8 | ENSG00000255323 | LINC01495 | long intergenic non-protein coding RNA 1495 | 2.8074 | 0.0005 |
| 9 | ENSG00000201640 | RN7SKP28 | RN7SK pseudogene 28 | 2.5850 | 0.0019 |
| 10 | ENSG00000217878 | pseudogene similar to zinc finger proteins | 2.5850 | 0.0019 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000273125 | LINC01990 | long intergenic non-protein coding RNA 1990 | -1.9655 | 0.0000 |
| 63340 | ENSG00000265368 | MIR4476 | microRNA 4476 | -1.9651 | 0.0000 |
| 63339 | ENSG00000106031 | HOXA13 | homeobox A13 | -1.9643 | 0.0000 |
| 63338 | ENSG00000246366 | LACTB2-AS1 | LACTB2 antisense RNA 1 | -1.9634 | 0.0000 |
| 63337 | ENSG00000185608 | MRPL40 | mitochondrial ribosomal protein L40 | -1.9611 | 0.0000 |
| 63336 | ENSG00000140600 | SH3GL3 | SH3 domain containing GRB2 like 3, endophilin A3 | -1.9609 | 0.0000 |
| 63335 | ENSG00000121274 | TENT4B | terminal nucleotidyltransferase 4B | -1.9603 | 0.0000 |
| 63334 | ENSG00000228426 | novel transcript | -1.9602 | 0.0000 | |
| 63333 | ENSG00000283183 | novel transcript | -1.9598 | 0.0000 | |
| 63332 | ENSG00000163251 | FZD5 | frizzled class receptor 5 | -1.9585 | 0.0000 |
