Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481628

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481628


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M101Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276094 Small nucleolar RNA SNORA70 3.0000 0.0000
2 ENSG00000276562 RN7SL565P RNA, 7SL, cytoplasmic 565, pseudogene 3.0000 0.0000
3 ENSG00000277340 ribosomal protein L10 (RPL10) pseudogene 3.0000 0.0000
4 ENSG00000226042 CDY10P chromodomain Y-linked 10 pseudogene 2.9122 0.0000
5 ENSG00000197416 FABP12 fatty acid binding protein 12 2.8074 0.0005
6 ENSG00000236032 OR5H14 olfactory receptor family 5 subfamily H member 14 2.8074 0.0000
7 ENSG00000249225 novel transcript, antisense to OR5H1, OR5H14, OR5H15 2.8074 0.0000
8 ENSG00000255323 LINC01495 long intergenic non-protein coding RNA 1495 2.8074 0.0005
9 ENSG00000201640 RN7SKP28 RN7SK pseudogene 28 2.5850 0.0019
10 ENSG00000217878 pseudogene similar to zinc finger proteins 2.5850 0.0019

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000259414 hect domain and RLD 2 pseudogene 7 -1.8797 0.0148
63127 ENSG00000087250 MT3 metallothionein 3 -1.8797 0.0000
63126 ENSG00000248449 PCDHGB8P protocadherin gamma subfamily B, 8 pseudogene -1.8795 0.0000
63125 ENSG00000168748 CA7 carbonic anhydrase 7 -1.8786 0.0000
63124 ENSG00000118785 SPP1 secreted phosphoprotein 1 -1.8785 0.0005
63123 ENSG00000168772 CXXC4 CXXC finger protein 4 -1.8784 0.0000
63122 ENSG00000261915 novel protein -1.8780 0.0000
63121 ENSG00000184254 ALDH1A3 aldehyde dehydrogenase 1 family member A3 -1.8776 0.0000
63120 ENSG00000120055 C10orf95 chromosome 10 open reading frame 95 -1.8757 0.0000
63119 ENSG00000266019 MIR3609 microRNA 3609 -1.8756 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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