Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481628

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481628 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M101	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000276094		Small nucleolar RNA SNORA70	3.0000	0.0000
2	ENSG00000276562	RN7SL565P	RNA, 7SL, cytoplasmic 565, pseudogene	3.0000	0.0000
3	ENSG00000277340		ribosomal protein L10 (RPL10) pseudogene	3.0000	0.0000
4	ENSG00000226042	CDY10P	chromodomain Y-linked 10 pseudogene	2.9122	0.0000
5	ENSG00000197416	FABP12	fatty acid binding protein 12	2.8074	0.0005
6	ENSG00000236032	OR5H14	olfactory receptor family 5 subfamily H member 14	2.8074	0.0000
7	ENSG00000249225		novel transcript, antisense to OR5H1, OR5H14, OR5H15	2.8074	0.0000
8	ENSG00000255323	LINC01495	long intergenic non-protein coding RNA 1495	2.8074	0.0005
9	ENSG00000201640	RN7SKP28	RN7SK pseudogene 28	2.5850	0.0019
10	ENSG00000217878		pseudogene similar to zinc finger proteins	2.5850	0.0019

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000259414		hect domain and RLD 2 pseudogene 7	-1.8797	0.0148
63127	ENSG00000087250	MT3	metallothionein 3	-1.8797	0.0000
63126	ENSG00000248449	PCDHGB8P	protocadherin gamma subfamily B, 8 pseudogene	-1.8795	0.0000
63125	ENSG00000168748	CA7	carbonic anhydrase 7	-1.8786	0.0000
63124	ENSG00000118785	SPP1	secreted phosphoprotein 1	-1.8785	0.0005
63123	ENSG00000168772	CXXC4	CXXC finger protein 4	-1.8784	0.0000
63122	ENSG00000261915		novel protein	-1.8780	0.0000
63121	ENSG00000184254	ALDH1A3	aldehyde dehydrogenase 1 family member A3	-1.8776	0.0000
63120	ENSG00000120055	C10orf95	chromosome 10 open reading frame 95	-1.8757	0.0000
63119	ENSG00000266019	MIR3609	microRNA 3609	-1.8756	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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