Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481628
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481628
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M101
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000276094
Small nucleolar RNA SNORA70
3.0000
0.0000
2
ENSG00000276562
RN7SL565P
RNA, 7SL, cytoplasmic 565, pseudogene
3.0000
0.0000
3
ENSG00000277340
ribosomal protein L10 (RPL10) pseudogene
3.0000
0.0000
4
ENSG00000226042
CDY10P
chromodomain Y-linked 10 pseudogene
2.9122
0.0000
5
ENSG00000197416
FABP12
fatty acid binding protein 12
2.8074
0.0005
6
ENSG00000236032
OR5H14
olfactory receptor family 5 subfamily H member 14
2.8074
0.0000
7
ENSG00000249225
novel transcript, antisense to OR5H1, OR5H14, OR5H15
2.8074
0.0000
8
ENSG00000255323
LINC01495
long intergenic non-protein coding RNA 1495
2.8074
0.0005
9
ENSG00000201640
RN7SKP28
RN7SK pseudogene 28
2.5850
0.0019
10
ENSG00000217878
pseudogene similar to zinc finger proteins
2.5850
0.0019
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000259414
hect domain and RLD 2 pseudogene 7
-1.8797
0.0148
63127
ENSG00000087250
MT3
metallothionein 3
-1.8797
0.0000
63126
ENSG00000248449
PCDHGB8P
protocadherin gamma subfamily B, 8 pseudogene
-1.8795
0.0000
63125
ENSG00000168748
CA7
carbonic anhydrase 7
-1.8786
0.0000
63124
ENSG00000118785
SPP1
secreted phosphoprotein 1
-1.8785
0.0005
63123
ENSG00000168772
CXXC4
CXXC finger protein 4
-1.8784
0.0000
63122
ENSG00000261915
novel protein
-1.8780
0.0000
63121
ENSG00000184254
ALDH1A3
aldehyde dehydrogenase 1 family member A3
-1.8776
0.0000
63120
ENSG00000120055
C10orf95
chromosome 10 open reading frame 95
-1.8757
0.0000
63119
ENSG00000266019
MIR3609
microRNA 3609
-1.8756
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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