Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481629

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481629


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M102Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283462 novel transcript 3.4846 0.0000
2 ENSG00000249089 AIG1P1 androgen induced 1 pseudogene 1 3.3219 0.0000
3 ENSG00000215353 C1QBPP1 complement C1q binding protein pseudogene 1 2.8074 0.0000
4 ENSG00000248915 ACTR6P1 ACTR6 pseudogene 1 2.8074 0.0003
5 ENSG00000254754 novel transcript 2.8074 0.0000
6 ENSG00000203565 novel transcript 2.6962 0.0000
7 ENSG00000260332 developmental pluripotency associated 3 (DPPA3) pseudogene 2.6962 0.0000
8 ENSG00000163734 CXCL3 C-X-C motif chemokine ligand 3 2.5850 0.0010
9 ENSG00000227261 YWHAZP7 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 7 2.5850 0.0000
10 ENSG00000232303 DFFBP1 DNA fragmentation factor subunit beta pseudogene 1 2.5850 0.0010

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000100836 PABPN1 poly(A) binding protein nuclear 1 -1.9724 0.0000
63127 ENSG00000258378 novel transcript, antisense to TIMM9 -1.9720 0.0000
63126 ENSG00000186288 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A -1.9718 0.0000
63125 ENSG00000249245 NCOA4P3 nuclear receptor coactivator 4 pseudogene 3 -1.9717 0.0000
63124 ENSG00000169035 KLK7 kallikrein related peptidase 7 -1.9717 0.0000
63123 ENSG00000272533 SNORA28 small nucleolar RNA, H/ACA box 28 -1.9715 0.0000
63122 ENSG00000173868 PHOSPHO1 phosphoethanolamine/phosphocholine phosphatase 1 -1.9712 0.0000
63121 ENSG00000234030 TMEM97P1 transmembrane protein 97 pseudogene 1 -1.9705 0.0000
63120 ENSG00000263585 novel transcript, antisense PYCR1 -1.9702 0.0000
63119 ENSG00000258938 novel transcript, antisense to BRMS1L -1.9691 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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