Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481629
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481629
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M102
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000283462
novel transcript
3.4846
0.0000
2
ENSG00000249089
AIG1P1
androgen induced 1 pseudogene 1
3.3219
0.0000
3
ENSG00000215353
C1QBPP1
complement C1q binding protein pseudogene 1
2.8074
0.0000
4
ENSG00000248915
ACTR6P1
ACTR6 pseudogene 1
2.8074
0.0003
5
ENSG00000254754
novel transcript
2.8074
0.0000
6
ENSG00000203565
novel transcript
2.6962
0.0000
7
ENSG00000260332
developmental pluripotency associated 3 (DPPA3) pseudogene
2.6962
0.0000
8
ENSG00000163734
CXCL3
C-X-C motif chemokine ligand 3
2.5850
0.0010
9
ENSG00000227261
YWHAZP7
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 7
2.5850
0.0000
10
ENSG00000232303
DFFBP1
DNA fragmentation factor subunit beta pseudogene 1
2.5850
0.0010
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000100836
PABPN1
poly(A) binding protein nuclear 1
-1.9724
0.0000
63127
ENSG00000258378
novel transcript, antisense to TIMM9
-1.9720
0.0000
63126
ENSG00000186288
PABPC1L2A
poly(A) binding protein cytoplasmic 1 like 2A
-1.9718
0.0000
63125
ENSG00000249245
NCOA4P3
nuclear receptor coactivator 4 pseudogene 3
-1.9717
0.0000
63124
ENSG00000169035
KLK7
kallikrein related peptidase 7
-1.9717
0.0000
63123
ENSG00000272533
SNORA28
small nucleolar RNA, H/ACA box 28
-1.9715
0.0000
63122
ENSG00000173868
PHOSPHO1
phosphoethanolamine/phosphocholine phosphatase 1
-1.9712
0.0000
63121
ENSG00000234030
TMEM97P1
transmembrane protein 97 pseudogene 1
-1.9705
0.0000
63120
ENSG00000263585
novel transcript, antisense PYCR1
-1.9702
0.0000
63119
ENSG00000258938
novel transcript, antisense to BRMS1L
-1.9691
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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