Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481629

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481629 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M102	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000283462		novel transcript	3.4846	0.0000
2	ENSG00000249089	AIG1P1	androgen induced 1 pseudogene 1	3.3219	0.0000
3	ENSG00000215353	C1QBPP1	complement C1q binding protein pseudogene 1	2.8074	0.0000
4	ENSG00000248915	ACTR6P1	ACTR6 pseudogene 1	2.8074	0.0003
5	ENSG00000254754		novel transcript	2.8074	0.0000
6	ENSG00000203565		novel transcript	2.6962	0.0000
7	ENSG00000260332		developmental pluripotency associated 3 (DPPA3) pseudogene	2.6962	0.0000
8	ENSG00000163734	CXCL3	C-X-C motif chemokine ligand 3	2.5850	0.0010
9	ENSG00000227261	YWHAZP7	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 7	2.5850	0.0000
10	ENSG00000232303	DFFBP1	DNA fragmentation factor subunit beta pseudogene 1	2.5850	0.0010

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000100836	PABPN1	poly(A) binding protein nuclear 1	-1.9724	0.0000
63127	ENSG00000258378		novel transcript, antisense to TIMM9	-1.9720	0.0000
63126	ENSG00000186288	PABPC1L2A	poly(A) binding protein cytoplasmic 1 like 2A	-1.9718	0.0000
63125	ENSG00000249245	NCOA4P3	nuclear receptor coactivator 4 pseudogene 3	-1.9717	0.0000
63124	ENSG00000169035	KLK7	kallikrein related peptidase 7	-1.9717	0.0000
63123	ENSG00000272533	SNORA28	small nucleolar RNA, H/ACA box 28	-1.9715	0.0000
63122	ENSG00000173868	PHOSPHO1	phosphoethanolamine/phosphocholine phosphatase 1	-1.9712	0.0000
63121	ENSG00000234030	TMEM97P1	transmembrane protein 97 pseudogene 1	-1.9705	0.0000
63120	ENSG00000263585		novel transcript, antisense PYCR1	-1.9702	0.0000
63119	ENSG00000258938		novel transcript, antisense to BRMS1L	-1.9691	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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