SHOGoiN Cell Methylome: GSM2481629

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481629


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M102Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283462 novel transcript 3.4846 0.0000
2 ENSG00000249089 AIG1P1 androgen induced 1 pseudogene 1 3.3219 0.0000
3 ENSG00000215353 C1QBPP1 complement C1q binding protein pseudogene 1 2.8074 0.0000
4 ENSG00000248915 ACTR6P1 ACTR6 pseudogene 1 2.8074 0.0003
5 ENSG00000254754 novel transcript 2.8074 0.0000
6 ENSG00000203565 novel transcript 2.6962 0.0000
7 ENSG00000260332 developmental pluripotency associated 3 (DPPA3) pseudogene 2.6962 0.0000
8 ENSG00000163734 CXCL3 C-X-C motif chemokine ligand 3 2.5850 0.0010
9 ENSG00000227261 YWHAZP7 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 7 2.5850 0.0000
10 ENSG00000232303 DFFBP1 DNA fragmentation factor subunit beta pseudogene 1 2.5850 0.0010

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000256167 ATF4P4 activating transcription factor 4 pseudogene 4 -2.0222 0.0000
63340 ENSG00000173157 ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 -2.0222 0.0000
63339 ENSG00000128609 NDUFA5 NADH:ubiquinone oxidoreductase subunit A5 -2.0220 0.0000
63338 ENSG00000203279 novel transcript -2.0218 0.0000
63337 ENSG00000213642 novel pseudogene -2.0212 0.0000
63336 ENSG00000259256 LINC01895 long intergenic non-protein coding RNA 1895 -2.0211 0.0000
63335 ENSG00000252002 RNA5SP154 RNA, 5S ribosomal pseudogene 154 -2.0203 0.0000
63334 ENSG00000235007 novel transcript -2.0203 0.0000
63333 ENSG00000065491 TBC1D22B TBC1 domain family member 22B -2.0197 0.0000
63332 ENSG00000185052 SLC24A3 solute carrier family 24 member 3 -2.0191 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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