SHOGoiN Cell Methylome: GSM2481629
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481629 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M102 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000283462 | novel transcript | 3.4846 | 0.0000 | |
| 2 | ENSG00000249089 | AIG1P1 | androgen induced 1 pseudogene 1 | 3.3219 | 0.0000 |
| 3 | ENSG00000215353 | C1QBPP1 | complement C1q binding protein pseudogene 1 | 2.8074 | 0.0000 |
| 4 | ENSG00000248915 | ACTR6P1 | ACTR6 pseudogene 1 | 2.8074 | 0.0003 |
| 5 | ENSG00000254754 | novel transcript | 2.8074 | 0.0000 | |
| 6 | ENSG00000203565 | novel transcript | 2.6962 | 0.0000 | |
| 7 | ENSG00000260332 | developmental pluripotency associated 3 (DPPA3) pseudogene | 2.6962 | 0.0000 | |
| 8 | ENSG00000163734 | CXCL3 | C-X-C motif chemokine ligand 3 | 2.5850 | 0.0010 |
| 9 | ENSG00000227261 | YWHAZP7 | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 7 | 2.5850 | 0.0000 |
| 10 | ENSG00000232303 | DFFBP1 | DNA fragmentation factor subunit beta pseudogene 1 | 2.5850 | 0.0010 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000256167 | ATF4P4 | activating transcription factor 4 pseudogene 4 | -2.0222 | 0.0000 |
| 63340 | ENSG00000173157 | ADAMTS20 | ADAM metallopeptidase with thrombospondin type 1 motif 20 | -2.0222 | 0.0000 |
| 63339 | ENSG00000128609 | NDUFA5 | NADH:ubiquinone oxidoreductase subunit A5 | -2.0220 | 0.0000 |
| 63338 | ENSG00000203279 | novel transcript | -2.0218 | 0.0000 | |
| 63337 | ENSG00000213642 | novel pseudogene | -2.0212 | 0.0000 | |
| 63336 | ENSG00000259256 | LINC01895 | long intergenic non-protein coding RNA 1895 | -2.0211 | 0.0000 |
| 63335 | ENSG00000252002 | RNA5SP154 | RNA, 5S ribosomal pseudogene 154 | -2.0203 | 0.0000 |
| 63334 | ENSG00000235007 | novel transcript | -2.0203 | 0.0000 | |
| 63333 | ENSG00000065491 | TBC1D22B | TBC1 domain family member 22B | -2.0197 | 0.0000 |
| 63332 | ENSG00000185052 | SLC24A3 | solute carrier family 24 member 3 | -2.0191 | 0.0000 |
