SHOGoiN Cell Methylome: GSM2481630

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481630


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M103Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202103 RNU4-12P RNA, U4 small nuclear 12, pseudogene 3.7004 0.0000
2 ENSG00000242715 CCDC169 coiled-coil domain containing 169 3.0000 0.0001
3 ENSG00000250709 CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough 3.0000 0.0001
4 ENSG00000200052 NA 2.8716 0.0000
5 ENSG00000280281 TEC 2.7459 0.0000
6 ENSG00000225343 RPL21P66 ribosomal protein L21 pseudogene 66 2.5850 0.0016
7 ENSG00000232915 ring finger protein 14 (RNF14) pseudogene 2.5850 0.0016
8 ENSG00000237593 ribosomal protein L17 (RPL17) pseudogene 2.5850 0.0016
9 ENSG00000249174 novel transcript 2.5850 0.0016
10 ENSG00000251946 RNU6-1023P RNA, U6 small nuclear 1023, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000124875 CXCL6 C-X-C motif chemokine ligand 6 -1.8813 0.0000
63340 ENSG00000123496 IL13RA2 interleukin 13 receptor subunit alpha 2 -1.8813 0.0060
63339 ENSG00000013016 EHD3 EH domain containing 3 -1.8810 0.0000
63338 ENSG00000234589 ribosomal protein L13a (RPL13A) pseudogene -1.8805 0.0000
63337 ENSG00000134590 RTL8C retrotransposon Gag like 8C -1.8801 0.0000
63336 ENSG00000125285 SOX21 SRY-box 21 -1.8799 0.0000
63335 ENSG00000248307 LINC00616 long intergenic non-protein coding RNA 616 -1.8792 0.0000
63334 ENSG00000204967 PCDHA4 protocadherin alpha 4 -1.8791 0.0000
63333 ENSG00000276577 RNU6-467P RNA, U6 small nuclear 467, pseudogene -1.8785 0.0000
63332 ENSG00000266839 novel transcript -1.8785 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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