SHOGoiN Cell Methylome: GSM2481630
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481630 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M103 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000202103 | RNU4-12P | RNA, U4 small nuclear 12, pseudogene | 3.7004 | 0.0000 |
| 2 | ENSG00000242715 | CCDC169 | coiled-coil domain containing 169 | 3.0000 | 0.0001 |
| 3 | ENSG00000250709 | CCDC169-SOHLH2 | CCDC169-SOHLH2 readthrough | 3.0000 | 0.0001 |
| 4 | ENSG00000200052 | NA | 2.8716 | 0.0000 | |
| 5 | ENSG00000280281 | TEC | 2.7459 | 0.0000 | |
| 6 | ENSG00000225343 | RPL21P66 | ribosomal protein L21 pseudogene 66 | 2.5850 | 0.0016 |
| 7 | ENSG00000232915 | ring finger protein 14 (RNF14) pseudogene | 2.5850 | 0.0016 | |
| 8 | ENSG00000237593 | ribosomal protein L17 (RPL17) pseudogene | 2.5850 | 0.0016 | |
| 9 | ENSG00000249174 | novel transcript | 2.5850 | 0.0016 | |
| 10 | ENSG00000251946 | RNU6-1023P | RNA, U6 small nuclear 1023, pseudogene | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000124875 | CXCL6 | C-X-C motif chemokine ligand 6 | -1.8813 | 0.0000 |
| 63340 | ENSG00000123496 | IL13RA2 | interleukin 13 receptor subunit alpha 2 | -1.8813 | 0.0060 |
| 63339 | ENSG00000013016 | EHD3 | EH domain containing 3 | -1.8810 | 0.0000 |
| 63338 | ENSG00000234589 | ribosomal protein L13a (RPL13A) pseudogene | -1.8805 | 0.0000 | |
| 63337 | ENSG00000134590 | RTL8C | retrotransposon Gag like 8C | -1.8801 | 0.0000 |
| 63336 | ENSG00000125285 | SOX21 | SRY-box 21 | -1.8799 | 0.0000 |
| 63335 | ENSG00000248307 | LINC00616 | long intergenic non-protein coding RNA 616 | -1.8792 | 0.0000 |
| 63334 | ENSG00000204967 | PCDHA4 | protocadherin alpha 4 | -1.8791 | 0.0000 |
| 63333 | ENSG00000276577 | RNU6-467P | RNA, U6 small nuclear 467, pseudogene | -1.8785 | 0.0000 |
| 63332 | ENSG00000266839 | novel transcript | -1.8785 | 0.0000 |
