Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2481630
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481630
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M103
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000202103
RNU4-12P
RNA, U4 small nuclear 12, pseudogene
3.7004
0.0000
2
ENSG00000242715
CCDC169
coiled-coil domain containing 169
3.0000
0.0001
3
ENSG00000250709
CCDC169-SOHLH2
CCDC169-SOHLH2 readthrough
3.0000
0.0001
4
ENSG00000200052
Y RNA
2.8716
0.0000
5
ENSG00000280281
TEC
2.7459
0.0000
6
ENSG00000225343
RPL21P66
ribosomal protein L21 pseudogene 66
2.5850
0.0016
7
ENSG00000232915
RNF14P1
RNF14 pseudogene 1
2.5850
0.0016
8
ENSG00000237593
ribosomal protein L17 (RPL17) pseudogene
2.5850
0.0016
9
ENSG00000249174
novel transcript
2.5850
0.0016
10
ENSG00000251946
RNU6-1023P
RNA, U6 small nuclear 1023, pseudogene
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000270889
PPP1R14BP4
protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4
-1.7973
0.0000
63127
ENSG00000230947
novel transcript
-1.7971
0.0000
63126
ENSG00000185950
IRS2
insulin receptor substrate 2
-1.7960
0.0000
63125
ENSG00000250555
novel transcript
-1.7959
0.0000
63124
ENSG00000135469
COQ10A
coenzyme Q10A
-1.7958
0.0000
63123
ENSG00000178695
KCTD12
potassium channel tetramerization domain containing 12
-1.7958
0.0000
63122
ENSG00000257839
novel transcript, antisense to PHLDA1
-1.7954
0.0000
63121
ENSG00000186047
DLEU7
deleted in lymphocytic leukemia 7
-1.7953
0.0000
63120
ENSG00000170214
ADRA1B
adrenoceptor alpha 1B
-1.7953
0.0000
63119
ENSG00000278907
novel transcript, antisense to PCDHA9
-1.7948
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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