Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481630

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481630


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M103Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202103 RNU4-12P RNA, U4 small nuclear 12, pseudogene 3.7004 0.0000
2 ENSG00000242715 CCDC169 coiled-coil domain containing 169 3.0000 0.0001
3 ENSG00000250709 CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough 3.0000 0.0001
4 ENSG00000200052 Y RNA 2.8716 0.0000
5 ENSG00000280281 TEC 2.7459 0.0000
6 ENSG00000225343 RPL21P66 ribosomal protein L21 pseudogene 66 2.5850 0.0016
7 ENSG00000232915 RNF14P1 RNF14 pseudogene 1 2.5850 0.0016
8 ENSG00000237593 ribosomal protein L17 (RPL17) pseudogene 2.5850 0.0016
9 ENSG00000249174 novel transcript 2.5850 0.0016
10 ENSG00000251946 RNU6-1023P RNA, U6 small nuclear 1023, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000270889 PPP1R14BP4 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4 -1.7973 0.0000
63127 ENSG00000230947 novel transcript -1.7971 0.0000
63126 ENSG00000185950 IRS2 insulin receptor substrate 2 -1.7960 0.0000
63125 ENSG00000250555 novel transcript -1.7959 0.0000
63124 ENSG00000135469 COQ10A coenzyme Q10A -1.7958 0.0000
63123 ENSG00000178695 KCTD12 potassium channel tetramerization domain containing 12 -1.7958 0.0000
63122 ENSG00000257839 novel transcript, antisense to PHLDA1 -1.7954 0.0000
63121 ENSG00000186047 DLEU7 deleted in lymphocytic leukemia 7 -1.7953 0.0000
63120 ENSG00000170214 ADRA1B adrenoceptor alpha 1B -1.7953 0.0000
63119 ENSG00000278907 novel transcript, antisense to PCDHA9 -1.7948 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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