Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481630

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481630 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M103	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000202103	RNU4-12P	RNA, U4 small nuclear 12, pseudogene	3.7004	0.0000
2	ENSG00000242715	CCDC169	coiled-coil domain containing 169	3.0000	0.0001
3	ENSG00000250709	CCDC169-SOHLH2	CCDC169-SOHLH2 readthrough	3.0000	0.0001
4	ENSG00000200052		Y RNA	2.8716	0.0000
5	ENSG00000280281		TEC	2.7459	0.0000
6	ENSG00000225343	RPL21P66	ribosomal protein L21 pseudogene 66	2.5850	0.0016
7	ENSG00000232915	RNF14P1	RNF14 pseudogene 1	2.5850	0.0016
8	ENSG00000237593		ribosomal protein L17 (RPL17) pseudogene	2.5850	0.0016
9	ENSG00000249174		novel transcript	2.5850	0.0016
10	ENSG00000251946	RNU6-1023P	RNA, U6 small nuclear 1023, pseudogene	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000270889	PPP1R14BP4	protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4	-1.7973	0.0000
63127	ENSG00000230947		novel transcript	-1.7971	0.0000
63126	ENSG00000185950	IRS2	insulin receptor substrate 2	-1.7960	0.0000
63125	ENSG00000250555		novel transcript	-1.7959	0.0000
63124	ENSG00000135469	COQ10A	coenzyme Q10A	-1.7958	0.0000
63123	ENSG00000178695	KCTD12	potassium channel tetramerization domain containing 12	-1.7958	0.0000
63122	ENSG00000257839		novel transcript, antisense to PHLDA1	-1.7954	0.0000
63121	ENSG00000186047	DLEU7	deleted in lymphocytic leukemia 7	-1.7953	0.0000
63120	ENSG00000170214	ADRA1B	adrenoceptor alpha 1B	-1.7953	0.0000
63119	ENSG00000278907		novel transcript, antisense to PCDHA9	-1.7948	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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