SHOGoiN Cell Methylome: GSM2481631

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481631


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M104Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186119 OR5D18 olfactory receptor family 5 subfamily D member 18 3.1699 0.0000
2 ENSG00000230250 LINC01753 long intergenic non-protein coding RNA 1753 2.8074 0.0003
3 ENSG00000233079 LINC01755 long intergenic non-protein coding RNA 1755 2.8074 0.0003
4 ENSG00000196778 OR52K1 olfactory receptor family 52 subfamily K member 1 2.5850 0.0012
5 ENSG00000212538 NA 2.5850 0.0000
6 ENSG00000226037 LINC01040 long intergenic non-protein coding RNA 1040 2.5850 0.0000
7 ENSG00000232217 FTLP8 ferritin light chain pseudogene 8 2.5850 0.0000
8 ENSG00000206969 RNU6-1316P RNA, U6 small nuclear 1316, pseudogene 2.3585 0.0000
9 ENSG00000186306 OR10T2 olfactory receptor family 10 subfamily T member 2 2.3219 0.0045
10 ENSG00000203402 novel transcript 2.3219 0.0045

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000197083 ZNF300P1 zinc finger protein 300 pseudogene 1 -1.8305 0.0774
63340 ENSG00000006638 TBXA2R thromboxane A2 receptor -1.8304 0.0000
63339 ENSG00000280294 TEC -1.8294 0.0000
63338 ENSG00000186222 BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 -1.8280 0.0000
63337 ENSG00000264359 NEK4P2 NIMA-related kinase 4 pseudogene 2 -1.8272 0.0000
63336 ENSG00000237669 HLA complex group 4 pseudogene 3 -1.8270 0.0000
63335 ENSG00000264004 MIR4717 microRNA 4717 -1.8264 0.0000
63334 ENSG00000231485 novel transcript -1.8259 0.0000
63333 ENSG00000165644 COMTD1 catechol-O-methyltransferase domain containing 1 -1.8259 0.0000
63332 ENSG00000277288 C10orf142 chromosome 10 open reading frame 142 -1.8251 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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