Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481631

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481631


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M104Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186119 OR5D18 olfactory receptor family 5 subfamily D member 18 3.1699 0.0000
2 ENSG00000230250 LINC01753 long intergenic non-protein coding RNA 1753 2.8074 0.0003
3 ENSG00000233079 LINC01755 long intergenic non-protein coding RNA 1755 2.8074 0.0003
4 ENSG00000196778 OR52K1 olfactory receptor family 52 subfamily K member 1 2.5850 0.0012
5 ENSG00000212538 Small nucleolar RNA U3 2.5850 0.0000
6 ENSG00000226037 LINC01040 long intergenic non-protein coding RNA 1040 2.5850 0.0000
7 ENSG00000232217 FTLP8 ferritin light chain pseudogene 8 2.5850 0.0000
8 ENSG00000206969 RNU6-1316P RNA, U6 small nuclear 1316, pseudogene 2.3585 0.0000
9 ENSG00000186306 OR10T2 olfactory receptor family 10 subfamily T member 2 2.3219 0.0045
10 ENSG00000203402 novel transcript 2.3219 0.0045

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000245146 MALINC1 mitosis associated long intergenic non-coding RNA 1 -1.7573 0.0000
63127 ENSG00000225230 novel transcript -1.7572 0.0000
63126 ENSG00000198883 PNMA5 PNMA family member 5 -1.7572 0.0000
63125 ENSG00000227009 FUNDC2P4 FUN14 domain containing 2 pseudogene 4 -1.7571 0.0000
63124 ENSG00000254122 PCDHGB7 protocadherin gamma subfamily B, 7 -1.7567 0.0000
63123 ENSG00000249152 LNCPRESS2 lncRNA p53 regulated and ESC associated 2 -1.7561 0.0000
63122 ENSG00000174358 SLC6A19 solute carrier family 6 member 19 -1.7560 0.0000
63121 ENSG00000273907 CA15P2 CA15 pseudogene 2 -1.7556 0.0000
63120 ENSG00000240173 RN7SL771P RNA, 7SL, cytoplasmic 771, pseudogene -1.7556 0.0000
63119 ENSG00000198900 TOP1 DNA topoisomerase I -1.7553 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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