Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481632
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481632
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M105
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000185821
OR6C76
olfactory receptor family 6 subfamily C member 76
2.8074
0.0009
2
ENSG00000230162
CT45A11P
cancer/testis antigen family 45 member A11, pseudogene
2.8074
0.0009
3
ENSG00000242097
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene
2.8074
0.0009
4
ENSG00000279392
ubiquitin-conjugating enzyme E2L 3 (UBE2L3) pseudogene
2.8074
0.0000
5
ENSG00000224697
NEFMP1
neurofilament medium pseudogene 1
2.4037
0.0000
6
ENSG00000236440
COPRSP1
COPRS pseudogene 1
2.3850
0.0000
7
ENSG00000183035
CYLC1
cylicin 1
2.3219
0.0001
8
ENSG00000196383
OR4Q2
olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene)
2.3219
0.0094
9
ENSG00000207139
Y RNA
2.3219
0.0001
10
ENSG00000226046
AP1S2P1
AP1S2 pseudogene 1
2.3219
0.0094
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000135469
COQ10A
coenzyme Q10A
-1.7642
0.0000
63127
ENSG00000198121
LPAR1
lysophosphatidic acid receptor 1
-1.7623
0.0000
63126
ENSG00000230872
MFSD13B
major facilitator superfamily domain containing 13B (pseudogene)
-1.7621
0.0000
63125
ENSG00000273172
LINC02091
long intergenic non-protein coding RNA 2091
-1.7615
0.0000
63124
ENSG00000170017
ALCAM
activated leukocyte cell adhesion molecule
-1.7604
0.0000
63123
ENSG00000232001
novel transcript
-1.7604
0.0002
63122
ENSG00000267783
novel transcript, antisense to ASF1B
-1.7595
0.0000
63121
ENSG00000261270
novel transcript, sense intronic to HERPUD1
-1.7593
0.0000
63120
ENSG00000196711
ALKAL1
ALK and LTK ligand 1
-1.7592
0.0000
63119
ENSG00000128656
CHN1
chimerin 1
-1.7589
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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