Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481632

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481632 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M105	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000185821	OR6C76	olfactory receptor family 6 subfamily C member 76	2.8074	0.0009
2	ENSG00000230162	CT45A11P	cancer/testis antigen family 45 member A11, pseudogene	2.8074	0.0009
3	ENSG00000242097		UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene	2.8074	0.0009
4	ENSG00000279392		ubiquitin-conjugating enzyme E2L 3 (UBE2L3) pseudogene	2.8074	0.0000
5	ENSG00000224697	NEFMP1	neurofilament medium pseudogene 1	2.4037	0.0000
6	ENSG00000236440	COPRSP1	COPRS pseudogene 1	2.3850	0.0000
7	ENSG00000183035	CYLC1	cylicin 1	2.3219	0.0001
8	ENSG00000196383	OR4Q2	olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene)	2.3219	0.0094
9	ENSG00000207139		Y RNA	2.3219	0.0001
10	ENSG00000226046	AP1S2P1	AP1S2 pseudogene 1	2.3219	0.0094

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000135469	COQ10A	coenzyme Q10A	-1.7642	0.0000
63127	ENSG00000198121	LPAR1	lysophosphatidic acid receptor 1	-1.7623	0.0000
63126	ENSG00000230872	MFSD13B	major facilitator superfamily domain containing 13B (pseudogene)	-1.7621	0.0000
63125	ENSG00000273172	LINC02091	long intergenic non-protein coding RNA 2091	-1.7615	0.0000
63124	ENSG00000170017	ALCAM	activated leukocyte cell adhesion molecule	-1.7604	0.0000
63123	ENSG00000232001		novel transcript	-1.7604	0.0002
63122	ENSG00000267783		novel transcript, antisense to ASF1B	-1.7595	0.0000
63121	ENSG00000261270		novel transcript, sense intronic to HERPUD1	-1.7593	0.0000
63120	ENSG00000196711	ALKAL1	ALK and LTK ligand 1	-1.7592	0.0000
63119	ENSG00000128656	CHN1	chimerin 1	-1.7589	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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