Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481632

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481632


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M105Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000185821 OR6C76 olfactory receptor family 6 subfamily C member 76 2.8074 0.0009
2 ENSG00000230162 CT45A11P cancer/testis antigen family 45 member A11, pseudogene 2.8074 0.0009
3 ENSG00000242097 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene 2.8074 0.0009
4 ENSG00000279392 ubiquitin-conjugating enzyme E2L 3 (UBE2L3) pseudogene 2.8074 0.0000
5 ENSG00000224697 NEFMP1 neurofilament medium pseudogene 1 2.4037 0.0000
6 ENSG00000236440 COPRSP1 COPRS pseudogene 1 2.3850 0.0000
7 ENSG00000183035 CYLC1 cylicin 1 2.3219 0.0001
8 ENSG00000196383 OR4Q2 olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) 2.3219 0.0094
9 ENSG00000207139 Y RNA 2.3219 0.0001
10 ENSG00000226046 AP1S2P1 AP1S2 pseudogene 1 2.3219 0.0094

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000135469 COQ10A coenzyme Q10A -1.7642 0.0000
63127 ENSG00000198121 LPAR1 lysophosphatidic acid receptor 1 -1.7623 0.0000
63126 ENSG00000230872 MFSD13B major facilitator superfamily domain containing 13B (pseudogene) -1.7621 0.0000
63125 ENSG00000273172 LINC02091 long intergenic non-protein coding RNA 2091 -1.7615 0.0000
63124 ENSG00000170017 ALCAM activated leukocyte cell adhesion molecule -1.7604 0.0000
63123 ENSG00000232001 novel transcript -1.7604 0.0002
63122 ENSG00000267783 novel transcript, antisense to ASF1B -1.7595 0.0000
63121 ENSG00000261270 novel transcript, sense intronic to HERPUD1 -1.7593 0.0000
63120 ENSG00000196711 ALKAL1 ALK and LTK ligand 1 -1.7592 0.0000
63119 ENSG00000128656 CHN1 chimerin 1 -1.7589 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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