SHOGoiN Cell Methylome: GSM2481632
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481632 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M105 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000185821 | OR6C76 | olfactory receptor family 6 subfamily C member 76 | 2.8074 | 0.0009 |
| 2 | ENSG00000230162 | CT45A11P | cancer/testis antigen family 45 member A11, pseudogene | 2.8074 | 0.0009 |
| 3 | ENSG00000242097 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene | 2.8074 | 0.0009 | |
| 4 | ENSG00000279392 | ubiquitin-conjugating enzyme E2L 3 (UBE2L3) pseudogene | 2.8074 | 0.0000 | |
| 5 | ENSG00000224697 | NEFMP1 | neurofilament medium pseudogene 1 | 2.4037 | 0.0000 |
| 6 | ENSG00000236440 | chromosome 17 open reading frame 79 (C17orf79) pseudogene | 2.3850 | 0.0000 | |
| 7 | ENSG00000183035 | CYLC1 | cylicin 1 | 2.3219 | 0.0001 |
| 8 | ENSG00000196383 | OR4Q2 | olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) | 2.3219 | 0.0094 |
| 9 | ENSG00000207139 | NA | 2.3219 | 0.0001 | |
| 10 | ENSG00000226046 | AP1S2P1 | AP1S2 pseudogene 1 | 2.3219 | 0.0094 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000107338 | SHB | SH2 domain containing adaptor protein B | -1.8381 | 0.0000 |
| 63340 | ENSG00000274740 | NA | -1.8366 | 0.0000 | |
| 63339 | ENSG00000199787 | SNORA80C | small nucleolar RNA, H/ACA box 80C | -1.8363 | 0.0000 |
| 63338 | ENSG00000262576 | PCDHGA4 | protocadherin gamma subfamily A, 4 | -1.8360 | 0.0000 |
| 63337 | ENSG00000271899 | MIR4466 | microRNA 4466 | -1.8351 | 0.0000 |
| 63336 | ENSG00000244274 | DBNDD2 | dysbindin domain containing 2 | -1.8351 | 0.0000 |
| 63335 | ENSG00000256218 | novel transcript | -1.8340 | 0.0132 | |
| 63334 | ENSG00000239261 | RPL31P41 | ribosomal protein L31 pseudogene 41 | -1.8340 | 0.0132 |
| 63333 | ENSG00000174876 | AMY1B | amylase alpha 1B (salivary) | -1.8340 | 0.0132 |
| 63332 | ENSG00000230051 | novel transcript | -1.8338 | 0.0000 |
