SHOGoiN Cell Methylome: GSM2481632

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481632


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M105Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000185821 OR6C76 olfactory receptor family 6 subfamily C member 76 2.8074 0.0009
2 ENSG00000230162 CT45A11P cancer/testis antigen family 45 member A11, pseudogene 2.8074 0.0009
3 ENSG00000242097 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene 2.8074 0.0009
4 ENSG00000279392 ubiquitin-conjugating enzyme E2L 3 (UBE2L3) pseudogene 2.8074 0.0000
5 ENSG00000224697 NEFMP1 neurofilament medium pseudogene 1 2.4037 0.0000
6 ENSG00000236440 chromosome 17 open reading frame 79 (C17orf79) pseudogene 2.3850 0.0000
7 ENSG00000183035 CYLC1 cylicin 1 2.3219 0.0001
8 ENSG00000196383 OR4Q2 olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) 2.3219 0.0094
9 ENSG00000207139 NA 2.3219 0.0001
10 ENSG00000226046 AP1S2P1 AP1S2 pseudogene 1 2.3219 0.0094

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000107338 SHB SH2 domain containing adaptor protein B -1.8381 0.0000
63340 ENSG00000274740 NA -1.8366 0.0000
63339 ENSG00000199787 SNORA80C small nucleolar RNA, H/ACA box 80C -1.8363 0.0000
63338 ENSG00000262576 PCDHGA4 protocadherin gamma subfamily A, 4 -1.8360 0.0000
63337 ENSG00000271899 MIR4466 microRNA 4466 -1.8351 0.0000
63336 ENSG00000244274 DBNDD2 dysbindin domain containing 2 -1.8351 0.0000
63335 ENSG00000256218 novel transcript -1.8340 0.0132
63334 ENSG00000239261 RPL31P41 ribosomal protein L31 pseudogene 41 -1.8340 0.0132
63333 ENSG00000174876 AMY1B amylase alpha 1B (salivary) -1.8340 0.0132
63332 ENSG00000230051 novel transcript -1.8338 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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