SHOGoiN Cell Methylome: GSM2481633
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481633 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M106 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000231861 | OR5K2 | olfactory receptor family 5 subfamily K member 2 | 2.9037 | 0.0000 |
| 2 | ENSG00000136897 | MRPL50 | mitochondrial ribosomal protein L50 | 2.8074 | 0.0006 |
| 3 | ENSG00000223786 | novel transcript | 2.8074 | 0.0006 | |
| 4 | ENSG00000231722 | chromatin modifying protein 4A (CHMP4A) pseudogene | 2.8074 | 0.0006 | |
| 5 | ENSG00000221710 | MIR1298 | microRNA 1298 | 2.5850 | 0.0021 |
| 6 | ENSG00000250842 | novel transcript | 2.5850 | 0.0021 | |
| 7 | ENSG00000230208 | IFNNP1 | interferon nu 1, pseudogene | 2.5364 | 0.0000 |
| 8 | ENSG00000252816 | RNA5SP337 | RNA, 5S ribosomal pseudogene 337 | 2.4037 | 0.0000 |
| 9 | ENSG00000147003 | CLTRN | collectrin, amino acid transport regulator | 2.3219 | 0.0001 |
| 10 | ENSG00000200079 | RNA5SP326 | RNA, 5S ribosomal pseudogene 326 | 2.3219 | 0.0073 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000155621 | C9orf85 | chromosome 9 open reading frame 85 | -1.8490 | 0.0000 |
| 63340 | ENSG00000284283 | TAF11L4 | TATA-box binding protein associated factor 11 like 4 | -1.8489 | 0.0000 |
| 63339 | ENSG00000225836 | novel transcript | -1.8488 | 0.0000 | |
| 63338 | ENSG00000282556 | novel transcript, antisense to PRKCDBP | -1.8488 | 0.0000 | |
| 63337 | ENSG00000138767 | CNOT6L | CCR4-NOT transcription complex subunit 6 like | -1.8484 | 0.0000 |
| 63336 | ENSG00000184481 | FOXO4 | forkhead box O4 | -1.8473 | 0.0000 |
| 63335 | ENSG00000198491 | novel transcript | -1.8469 | 0.0000 | |
| 63334 | ENSG00000168936 | TMEM129 | transmembrane protein 129 | -1.8466 | 0.0000 |
| 63333 | ENSG00000132952 | USPL1 | ubiquitin specific peptidase like 1 | -1.8461 | 0.0000 |
| 63332 | ENSG00000272086 | novel transcript | -1.8460 | 0.0000 |
