Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481633

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481633


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M106Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
2 ENSG00000136897 MRPL50 mitochondrial ribosomal protein L50 2.8074 0.0006
3 ENSG00000223786 novel transcript 2.8074 0.0006
4 ENSG00000231722 CHMP4AP1 CHMP4A pseudogene 1 2.8074 0.0006
5 ENSG00000221710 MIR1298 microRNA 1298 2.5850 0.0021
6 ENSG00000250842 novel transcript 2.5850 0.0021
7 ENSG00000230208 IFNNP1 interferon nu 1, pseudogene 2.5364 0.0000
8 ENSG00000252816 RNA5SP337 RNA, 5S ribosomal pseudogene 337 2.4037 0.0000
9 ENSG00000147003 CLTRN collectrin, amino acid transport regulator 2.3219 0.0001
10 ENSG00000200079 RNA5SP326 RNA, 5S ribosomal pseudogene 326 2.3219 0.0073

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000276644 DACH1 dachshund family transcription factor 1 -1.7820 0.0000
63127 ENSG00000252973 RNU6-1028P RNA, U6 small nuclear 1028, pseudogene -1.7820 0.0000
63126 ENSG00000116990 MYCL MYCL proto-oncogene, bHLH transcription factor -1.7818 0.0000
63125 ENSG00000198973 MIR375 microRNA 375 -1.7812 0.0000
63124 ENSG00000227128 LBX1-AS1 LBX1 antisense RNA 1 -1.7812 0.0000
63123 ENSG00000259952 novel transcript, antisense to MAZ -1.7806 0.0000
63122 ENSG00000017797 RALBP1 ralA binding protein 1 -1.7802 0.0000
63121 ENSG00000164749 HNF4G hepatocyte nuclear factor 4 gamma -1.7797 0.0000
63120 ENSG00000260293 novel transcript, intronic to TBC1D24 -1.7790 0.0000
63119 ENSG00000186493 C5orf38 chromosome 5 open reading frame 38 -1.7782 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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