SHOGoiN Cell Methylome: GSM2481633

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481633


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M106Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
2 ENSG00000136897 MRPL50 mitochondrial ribosomal protein L50 2.8074 0.0006
3 ENSG00000223786 novel transcript 2.8074 0.0006
4 ENSG00000231722 chromatin modifying protein 4A (CHMP4A) pseudogene 2.8074 0.0006
5 ENSG00000221710 MIR1298 microRNA 1298 2.5850 0.0021
6 ENSG00000250842 novel transcript 2.5850 0.0021
7 ENSG00000230208 IFNNP1 interferon nu 1, pseudogene 2.5364 0.0000
8 ENSG00000252816 RNA5SP337 RNA, 5S ribosomal pseudogene 337 2.4037 0.0000
9 ENSG00000147003 CLTRN collectrin, amino acid transport regulator 2.3219 0.0001
10 ENSG00000200079 RNA5SP326 RNA, 5S ribosomal pseudogene 326 2.3219 0.0073

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000155621 C9orf85 chromosome 9 open reading frame 85 -1.8490 0.0000
63340 ENSG00000284283 TAF11L4 TATA-box binding protein associated factor 11 like 4 -1.8489 0.0000
63339 ENSG00000225836 novel transcript -1.8488 0.0000
63338 ENSG00000282556 novel transcript, antisense to PRKCDBP -1.8488 0.0000
63337 ENSG00000138767 CNOT6L CCR4-NOT transcription complex subunit 6 like -1.8484 0.0000
63336 ENSG00000184481 FOXO4 forkhead box O4 -1.8473 0.0000
63335 ENSG00000198491 novel transcript -1.8469 0.0000
63334 ENSG00000168936 TMEM129 transmembrane protein 129 -1.8466 0.0000
63333 ENSG00000132952 USPL1 ubiquitin specific peptidase like 1 -1.8461 0.0000
63332 ENSG00000272086 novel transcript -1.8460 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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