Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481633
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481633
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M106
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000231861
OR5K2
olfactory receptor family 5 subfamily K member 2
2.9037
0.0000
2
ENSG00000136897
MRPL50
mitochondrial ribosomal protein L50
2.8074
0.0006
3
ENSG00000223786
novel transcript
2.8074
0.0006
4
ENSG00000231722
CHMP4AP1
CHMP4A pseudogene 1
2.8074
0.0006
5
ENSG00000221710
MIR1298
microRNA 1298
2.5850
0.0021
6
ENSG00000250842
novel transcript
2.5850
0.0021
7
ENSG00000230208
IFNNP1
interferon nu 1, pseudogene
2.5364
0.0000
8
ENSG00000252816
RNA5SP337
RNA, 5S ribosomal pseudogene 337
2.4037
0.0000
9
ENSG00000147003
CLTRN
collectrin, amino acid transport regulator
2.3219
0.0001
10
ENSG00000200079
RNA5SP326
RNA, 5S ribosomal pseudogene 326
2.3219
0.0073
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000276644
DACH1
dachshund family transcription factor 1
-1.7820
0.0000
63127
ENSG00000252973
RNU6-1028P
RNA, U6 small nuclear 1028, pseudogene
-1.7820
0.0000
63126
ENSG00000116990
MYCL
MYCL proto-oncogene, bHLH transcription factor
-1.7818
0.0000
63125
ENSG00000198973
MIR375
microRNA 375
-1.7812
0.0000
63124
ENSG00000227128
LBX1-AS1
LBX1 antisense RNA 1
-1.7812
0.0000
63123
ENSG00000259952
novel transcript, antisense to MAZ
-1.7806
0.0000
63122
ENSG00000017797
RALBP1
ralA binding protein 1
-1.7802
0.0000
63121
ENSG00000164749
HNF4G
hepatocyte nuclear factor 4 gamma
-1.7797
0.0000
63120
ENSG00000260293
novel transcript, intronic to TBC1D24
-1.7790
0.0000
63119
ENSG00000186493
C5orf38
chromosome 5 open reading frame 38
-1.7782
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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