Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481633

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481633 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M106	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000231861	OR5K2	olfactory receptor family 5 subfamily K member 2	2.9037	0.0000
2	ENSG00000136897	MRPL50	mitochondrial ribosomal protein L50	2.8074	0.0006
3	ENSG00000223786		novel transcript	2.8074	0.0006
4	ENSG00000231722	CHMP4AP1	CHMP4A pseudogene 1	2.8074	0.0006
5	ENSG00000221710	MIR1298	microRNA 1298	2.5850	0.0021
6	ENSG00000250842		novel transcript	2.5850	0.0021
7	ENSG00000230208	IFNNP1	interferon nu 1, pseudogene	2.5364	0.0000
8	ENSG00000252816	RNA5SP337	RNA, 5S ribosomal pseudogene 337	2.4037	0.0000
9	ENSG00000147003	CLTRN	collectrin, amino acid transport regulator	2.3219	0.0001
10	ENSG00000200079	RNA5SP326	RNA, 5S ribosomal pseudogene 326	2.3219	0.0073

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000276644	DACH1	dachshund family transcription factor 1	-1.7820	0.0000
63127	ENSG00000252973	RNU6-1028P	RNA, U6 small nuclear 1028, pseudogene	-1.7820	0.0000
63126	ENSG00000116990	MYCL	MYCL proto-oncogene, bHLH transcription factor	-1.7818	0.0000
63125	ENSG00000198973	MIR375	microRNA 375	-1.7812	0.0000
63124	ENSG00000227128	LBX1-AS1	LBX1 antisense RNA 1	-1.7812	0.0000
63123	ENSG00000259952		novel transcript, antisense to MAZ	-1.7806	0.0000
63122	ENSG00000017797	RALBP1	ralA binding protein 1	-1.7802	0.0000
63121	ENSG00000164749	HNF4G	hepatocyte nuclear factor 4 gamma	-1.7797	0.0000
63120	ENSG00000260293		novel transcript, intronic to TBC1D24	-1.7790	0.0000
63119	ENSG00000186493	C5orf38	chromosome 5 open reading frame 38	-1.7782	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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