Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481634

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481634


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M107Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237225 OR13K1P olfactory receptor family 13 subfamily K member 1 pseudogene 2.9037 0.0000
2 ENSG00000231557 novel transcript 2.6160 0.0000
3 ENSG00000243939 ribosomal protein L23 (RPL23) pseudogene 2.5850 0.0021
4 ENSG00000257272 novel transcript 2.5687 0.0000
5 ENSG00000249959 novel transcript 2.4534 0.0000
6 ENSG00000130385 BMP15 bone morphogenetic protein 15 2.3219 0.0072
7 ENSG00000150269 OR5M9 olfactory receptor family 5 subfamily M member 9 2.3219 0.0072
8 ENSG00000157181 ODR4 odr-4 GPCR localization factor homolog 2.3219 0.0072
9 ENSG00000226881 H3P44 H3 histone pseudogene 44 2.3219 0.0072
10 ENSG00000229578 LINC00358 long intergenic non-protein coding RNA 358 2.3219 0.0072

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63127 ENSG00000247011 novel transcript -1.7272 0.0000
63126 ENSG00000116199 FAM20B FAM20B glycosaminoglycan xylosylkinase -1.7262 0.0000
63125 ENSG00000271420 novel transcript -1.7259 0.0000
63124 ENSG00000088035 ALG6 ALG6 alpha-1,3-glucosyltransferase -1.7258 0.0000
63123 ENSG00000276941 MIR4509-1 microRNA 4509-1 -1.7246 0.0000
63122 ENSG00000232760 novel pseudogene -1.7245 0.0000
63121 ENSG00000104331 BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 -1.7245 0.0000
63120 ENSG00000226863 SHROOM2P1 shroom family member 2 pseudogene 1 -1.7245 0.0000
63119 ENSG00000172497 ACOT12 acyl-CoA thioesterase 12 -1.7242 0.0000
10 ENSG00000229578 LINC00358 long intergenic non-protein coding RNA 358 2.3219 0.0072

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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