SHOGoiN Cell Methylome: GSM2481634

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481634


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M107Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237225 OR13K1P olfactory receptor family 13 subfamily K member 1 pseudogene 2.9037 0.0000
2 ENSG00000231557 novel transcript 2.6160 0.0000
3 ENSG00000243939 ribosomal protein L23 (RPL23) pseudogene 2.5850 0.0021
4 ENSG00000257272 novel transcript 2.5687 0.0000
5 ENSG00000249959 novel transcript 2.4534 0.0000
6 ENSG00000130385 BMP15 bone morphogenetic protein 15 2.3219 0.0072
7 ENSG00000150269 OR5M9 olfactory receptor family 5 subfamily M member 9 2.3219 0.0072
8 ENSG00000157181 ODR4 odr-4 GPCR localization factor homolog 2.3219 0.0072
9 ENSG00000226881 H3F3AP5 H3 histone, family 3A, pseudogene 5 2.3219 0.0072
10 ENSG00000229578 LINC00358 long intergenic non-protein coding RNA 358 2.3219 0.0072

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000223327 RNU2-71P RNA, U2 small nuclear 71, pseudogene -1.7925 0.0007
63340 ENSG00000212495 RNU6-332P RNA, U6 small nuclear 332, pseudogene -1.7925 0.1903
63339 ENSG00000277437 NA -1.7922 0.0000
63338 ENSG00000251402 FAM90A25P family with sequence similarity 90 member A25, pseudogene -1.7920 0.0000
63337 ENSG00000250794 ALG1L12P ALG1 like 12, pseudogene -1.7920 0.0000
63336 ENSG00000169071 ROR2 receptor tyrosine kinase like orphan receptor 2 -1.7917 0.0000
63335 ENSG00000236678 LINC00347 long intergenic non-protein coding RNA 347 -1.7917 0.0000
63334 ENSG00000275793 RIMBP3 RIMS binding protein 3 -1.7907 0.0000
63333 ENSG00000260260 SNHG19 small nucleolar RNA host gene 19 -1.7901 0.0000
63332 ENSG00000256806 C17orf100 chromosome 17 open reading frame 100 -1.7894 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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