SHOGoiN Cell Methylome: GSM2481635
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481635 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M108 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000249418 | frataxin (FXN) pseudogene | 3.4534 | 0.0000 | |
| 2 | ENSG00000280098 | TEC | 2.8074 | 0.0000 | |
| 3 | ENSG00000212122 | TSSK1B | testis specific serine kinase 1B | 2.6733 | 0.0000 |
| 4 | ENSG00000279299 | novel transcript | 2.6610 | 0.0000 | |
| 5 | ENSG00000253424 | novel transcript | 2.5850 | 0.0034 | |
| 6 | ENSG00000264607 | MIR3173 | microRNA 3173 | 2.5850 | 0.0034 |
| 7 | ENSG00000281708 | ERC2-IT1 | ERC2 intronic transcript 1 | 2.5850 | 0.0034 |
| 8 | ENSG00000232633 | novel transcript | 2.5826 | 0.0000 | |
| 9 | ENSG00000213109 | ribosomal protein L7a (RPL7A) pseudogene | 2.5295 | 0.0000 | |
| 10 | ENSG00000199530 | NA | 2.4387 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000279036 | TEC | -1.9130 | 0.0000 | |
| 63340 | ENSG00000258804 | LINC01148 | long intergenic non-protein coding RNA 1148 | -1.9111 | 0.0000 |
| 63339 | ENSG00000254156 | MTND6P20 | MT-ND6 pseudogene 20 | -1.9110 | 0.0124 |
| 63338 | ENSG00000249328 | novel transcript | -1.9110 | 0.0124 | |
| 63337 | ENSG00000258450 | novel transcript | -1.9103 | 0.0000 | |
| 63336 | ENSG00000272702 | novel transcript | -1.9102 | 0.0000 | |
| 63335 | ENSG00000137090 | DMRT1 | doublesex and mab-3 related transcription factor 1 | -1.9097 | 0.0000 |
| 63334 | ENSG00000254408 | OR4A1P | olfactory receptor family 4 subfamily A member 1 pseudogene | -1.9096 | 0.0000 |
| 63333 | ENSG00000255181 | CCDC166 | coiled-coil domain containing 166 | -1.9095 | 0.0000 |
| 63332 | ENSG00000234008 | PPP1R2P2 | protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 | -1.9088 | 0.0000 |
