Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481635

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481635 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M108	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000249418		frataxin (FXN) pseudogene	3.4534	0.0000
2	ENSG00000280098		TEC	2.8074	0.0000
3	ENSG00000212122	TSSK1B	testis specific serine kinase 1B	2.6733	0.0000
4	ENSG00000279299		novel transcript	2.6610	0.0000
5	ENSG00000253424		novel transcript	2.5850	0.0034
6	ENSG00000264607	MIR3173	microRNA 3173	2.5850	0.0034
7	ENSG00000281708	ERC2-IT1	ERC2 intronic transcript 1	2.5850	0.0034
8	ENSG00000232633		novel transcript	2.5826	0.0000
9	ENSG00000213109		ribosomal protein L7a (RPL7A) pseudogene	2.5295	0.0000
10	ENSG00000199530		Y RNA	2.4387	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000270136	MICOS10-NBL1	MICOS10-NBL1 readthrough	-1.8151	0.0000
63127	ENSG00000173436	MICOS10	mitochondrial contact site and cristae organizing system subunit 10	-1.8151	0.0000
63126	ENSG00000242137	RPL11P5	ribosomal protein L11 pseudogene 5	-1.8145	0.0000
63125	ENSG00000253465	IGHVIV-44-1	immunoglobulin heavy variable (IV)-44-1 (pseudogene)	-1.8144	0.0000
63124	ENSG00000185668	POU3F1	POU class 3 homeobox 1	-1.8143	0.0000
63123	ENSG00000279873	LINC01126	long intergenic non-protein coding RNA 1126	-1.8136	0.0000
63122	ENSG00000114948	ADAM23	ADAM metallopeptidase domain 23	-1.8135	0.0000
63121	ENSG00000184113	CLDN5	claudin 5	-1.8133	0.0000
63120	ENSG00000251567		novel transcript	-1.8130	0.0000
63119	ENSG00000176273	SLC35G1	solute carrier family 35 member G1	-1.8127	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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