Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481635
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481635
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M108
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000249418
frataxin (FXN) pseudogene
3.4534
0.0000
2
ENSG00000280098
TEC
2.8074
0.0000
3
ENSG00000212122
TSSK1B
testis specific serine kinase 1B
2.6733
0.0000
4
ENSG00000279299
novel transcript
2.6610
0.0000
5
ENSG00000253424
novel transcript
2.5850
0.0034
6
ENSG00000264607
MIR3173
microRNA 3173
2.5850
0.0034
7
ENSG00000281708
ERC2-IT1
ERC2 intronic transcript 1
2.5850
0.0034
8
ENSG00000232633
novel transcript
2.5826
0.0000
9
ENSG00000213109
ribosomal protein L7a (RPL7A) pseudogene
2.5295
0.0000
10
ENSG00000199530
Y RNA
2.4387
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000270136
MICOS10-NBL1
MICOS10-NBL1 readthrough
-1.8151
0.0000
63127
ENSG00000173436
MICOS10
mitochondrial contact site and cristae organizing system subunit 10
-1.8151
0.0000
63126
ENSG00000242137
RPL11P5
ribosomal protein L11 pseudogene 5
-1.8145
0.0000
63125
ENSG00000253465
IGHVIV-44-1
immunoglobulin heavy variable (IV)-44-1 (pseudogene)
-1.8144
0.0000
63124
ENSG00000185668
POU3F1
POU class 3 homeobox 1
-1.8143
0.0000
63123
ENSG00000279873
LINC01126
long intergenic non-protein coding RNA 1126
-1.8136
0.0000
63122
ENSG00000114948
ADAM23
ADAM metallopeptidase domain 23
-1.8135
0.0000
63121
ENSG00000184113
CLDN5
claudin 5
-1.8133
0.0000
63120
ENSG00000251567
novel transcript
-1.8130
0.0000
63119
ENSG00000176273
SLC35G1
solute carrier family 35 member G1
-1.8127
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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