Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481635

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481635


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M108Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249418 frataxin (FXN) pseudogene 3.4534 0.0000
2 ENSG00000280098 TEC 2.8074 0.0000
3 ENSG00000212122 TSSK1B testis specific serine kinase 1B 2.6733 0.0000
4 ENSG00000279299 novel transcript 2.6610 0.0000
5 ENSG00000253424 novel transcript 2.5850 0.0034
6 ENSG00000264607 MIR3173 microRNA 3173 2.5850 0.0034
7 ENSG00000281708 ERC2-IT1 ERC2 intronic transcript 1 2.5850 0.0034
8 ENSG00000232633 novel transcript 2.5826 0.0000
9 ENSG00000213109 ribosomal protein L7a (RPL7A) pseudogene 2.5295 0.0000
10 ENSG00000199530 Y RNA 2.4387 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000270136 MICOS10-NBL1 MICOS10-NBL1 readthrough -1.8151 0.0000
63127 ENSG00000173436 MICOS10 mitochondrial contact site and cristae organizing system subunit 10 -1.8151 0.0000
63126 ENSG00000242137 RPL11P5 ribosomal protein L11 pseudogene 5 -1.8145 0.0000
63125 ENSG00000253465 IGHVIV-44-1 immunoglobulin heavy variable (IV)-44-1 (pseudogene) -1.8144 0.0000
63124 ENSG00000185668 POU3F1 POU class 3 homeobox 1 -1.8143 0.0000
63123 ENSG00000279873 LINC01126 long intergenic non-protein coding RNA 1126 -1.8136 0.0000
63122 ENSG00000114948 ADAM23 ADAM metallopeptidase domain 23 -1.8135 0.0000
63121 ENSG00000184113 CLDN5 claudin 5 -1.8133 0.0000
63120 ENSG00000251567 novel transcript -1.8130 0.0000
63119 ENSG00000176273 SLC35G1 solute carrier family 35 member G1 -1.8127 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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