SHOGoiN Cell Methylome: GSM2481635

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481635


Profile download
7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M108Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249418 frataxin (FXN) pseudogene 3.4534 0.0000
2 ENSG00000280098 TEC 2.8074 0.0000
3 ENSG00000212122 TSSK1B testis specific serine kinase 1B 2.6733 0.0000
4 ENSG00000279299 novel transcript 2.6610 0.0000
5 ENSG00000253424 novel transcript 2.5850 0.0034
6 ENSG00000264607 MIR3173 microRNA 3173 2.5850 0.0034
7 ENSG00000281708 ERC2-IT1 ERC2 intronic transcript 1 2.5850 0.0034
8 ENSG00000232633 novel transcript 2.5826 0.0000
9 ENSG00000213109 ribosomal protein L7a (RPL7A) pseudogene 2.5295 0.0000
10 ENSG00000199530 NA 2.4387 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000279036 TEC -1.9130 0.0000
63340 ENSG00000258804 LINC01148 long intergenic non-protein coding RNA 1148 -1.9111 0.0000
63339 ENSG00000254156 MTND6P20 MT-ND6 pseudogene 20 -1.9110 0.0124
63338 ENSG00000249328 novel transcript -1.9110 0.0124
63337 ENSG00000258450 novel transcript -1.9103 0.0000
63336 ENSG00000272702 novel transcript -1.9102 0.0000
63335 ENSG00000137090 DMRT1 doublesex and mab-3 related transcription factor 1 -1.9097 0.0000
63334 ENSG00000254408 OR4A1P olfactory receptor family 4 subfamily A member 1 pseudogene -1.9096 0.0000
63333 ENSG00000255181 CCDC166 coiled-coil domain containing 166 -1.9095 0.0000
63332 ENSG00000234008 PPP1R2P2 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 -1.9088 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...