SHOGoiN Cell Methylome: GSM2481636

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481636


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M109Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000131263 RLIM ring finger protein, LIM domain interacting 2.5850 0.0000
2 ENSG00000243770 RN7SL65P RNA, 7SL, cytoplasmic 65, pseudogene 2.5850 0.0000
4 ENSG00000213452 AKR1B1P2 aldo-keto reductase family 1 member B1 pseudogene 2 2.3258 0.0000
5 ENSG00000207359 RNU6-925P RNA, U6 small nuclear 925, pseudogene 2.3219 0.0000
6 ENSG00000217874 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene 2.3219 0.0000
7 ENSG00000219404 neugrin, neurite outgrowth associated (NGRN) pseudogene 2.3219 0.0011
8 ENSG00000232341 RPL4P2 ribosomal protein L4 pseudogene 2 2.3219 0.0011
9 ENSG00000249780 pseudogene similar to part of mitochondrially encoded cytochrome c oxidase III (MT-CO3) 2.3219 0.0011
10 ENSG00000279479 novel transcript 2.3219 0.0000
63332 ENSG00000200713 RNU6-682P RNA, U6 small nuclear 682, pseudogene -1.6573 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000112320 SOBP sine oculis binding protein homolog -1.6621 0.0000
63340 ENSG00000271563 HIRAP1 histone cell cycle regulator pseudogene 1 -1.6610 0.5921
63339 ENSG00000186889 TMEM17 transmembrane protein 17 -1.6610 0.0001
63338 ENSG00000205358 MT1H metallothionein 1H -1.6604 0.0000
63337 ENSG00000253027 NA -1.6597 0.0000
63336 ENSG00000236807 ribosomal protein L10 (RPL10) pseudogene -1.6597 0.0000
63335 ENSG00000222067 RNU4-86P RNA, U4 small nuclear 86, pseudogene -1.6587 0.0000
63334 ENSG00000087299 L2HGDH L-2-hydroxyglutarate dehydrogenase -1.6583 0.0000
63333 ENSG00000180053 NKX2-6 NK2 homeobox 6 -1.6579 0.0000
63332 ENSG00000200713 RNU6-682P RNA, U6 small nuclear 682, pseudogene -1.6573 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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