Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481637

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481637 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M110	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000255148		novel transcript	3.1699	0.0000
2	ENSG00000265494		novel transcript	3.0425	0.0000
3	ENSG00000207583	MIR606	microRNA 606	3.0000	0.0001
4	ENSG00000217416	ISCA1P1	iron-sulfur cluster assembly 1 pseudogene 1	3.0000	0.0001
5	ENSG00000169306	IL1RAPL1	interleukin 1 receptor accessory protein like 1	2.8074	0.0000
6	ENSG00000226383	LINC01876	long intergenic non-protein coding RNA 1876	2.8074	0.0002
7	ENSG00000253539		novel transcript	2.8074	0.0000
8	ENSG00000253912		ribosomal protein L18a (RPL18A) pseudogene	2.8074	0.0000
9	ENSG00000270779		DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 (DDX4) pseudogene	2.8074	0.0000
10	ENSG00000252255	RNU2-35P	RNA, U2 small nuclear 35, pseudogene	2.6962	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000277269		NA	-1.8556	0.0000
63127	ENSG00000259081		novel transcript	-1.8547	0.0000
63126	ENSG00000266554	LINC01443	long intergenic non-protein coding RNA 1443	-1.8545	0.0000
63125	ENSG00000254862	LGR4-AS1	LGR4 antisense RNA 1	-1.8542	0.0000
63124	ENSG00000187792	ZNF70	zinc finger protein 70	-1.8542	0.0000
63123	ENSG00000207243		Y RNA	-1.8540	0.0000
63122	ENSG00000125484	GTF3C4	general transcription factor IIIC subunit 4	-1.8528	0.0000
63121	ENSG00000198743	SLC5A3	solute carrier family 5 member 3	-1.8526	0.0000
63120	ENSG00000183072	NKX2-5	NK2 homeobox 5	-1.8521	0.0000
63119	ENSG00000196660	SLC30A10	solute carrier family 30 member 10	-1.8515	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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