SHOGoiN Cell Methylome: GSM2481637
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481637 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M110 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000255148 | novel transcript | 3.1699 | 0.0000 | |
| 2 | ENSG00000265494 | novel transcript | 3.0425 | 0.0000 | |
| 3 | ENSG00000207583 | MIR606 | microRNA 606 | 3.0000 | 0.0001 |
| 4 | ENSG00000217416 | ISCA1P1 | iron-sulfur cluster assembly 1 pseudogene 1 | 3.0000 | 0.0001 |
| 5 | ENSG00000169306 | IL1RAPL1 | interleukin 1 receptor accessory protein like 1 | 2.8074 | 0.0000 |
| 6 | ENSG00000226383 | LINC01876 | long intergenic non-protein coding RNA 1876 | 2.8074 | 0.0002 |
| 7 | ENSG00000253539 | novel transcript | 2.8074 | 0.0000 | |
| 8 | ENSG00000253912 | ribosomal protein L18a (RPL18A) pseudogene | 2.8074 | 0.0000 | |
| 9 | ENSG00000270779 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 (DDX4) pseudogene | 2.8074 | 0.0000 | |
| 10 | ENSG00000252255 | RNU2-35P | RNA, U2 small nuclear 35, pseudogene | 2.6962 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000257563 | microRNA 3180-3 | -1.9412 | 0.0000 | |
| 63340 | ENSG00000187140 | FOXD3 | forkhead box D3 | -1.9406 | 0.0000 |
| 63339 | ENSG00000268230 | novel transcript | -1.9400 | 0.0000 | |
| 63338 | ENSG00000168310 | IRF2 | interferon regulatory factor 2 | -1.9392 | 0.0000 |
| 63337 | ENSG00000146521 | LINC01558 | long intergenic non-protein coding RNA 1558 | -1.9392 | 0.0000 |
| 63336 | ENSG00000224631 | RPS27AP16 | ribosomal protein S27a pseudogene 16 | -1.9389 | 0.0000 |
| 63335 | ENSG00000258303 | novel transcript | -1.9388 | 0.0000 | |
| 63334 | ENSG00000196196 | HRCT1 | histidine rich carboxyl terminus 1 | -1.9384 | 0.0000 |
| 63333 | ENSG00000281852 | LINC00891 | long intergenic non-protein coding RNA 891 | -1.9380 | 0.0000 |
| 63332 | ENSG00000252224 | RNU4ATAC15P | RNA, U4atac small nuclear 15, pseudogene | -1.9368 | 0.0000 |
