Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481637

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481637


Profile download
7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M110Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255148 novel transcript 3.1699 0.0000
2 ENSG00000265494 novel transcript 3.0425 0.0000
3 ENSG00000207583 MIR606 microRNA 606 3.0000 0.0001
4 ENSG00000217416 ISCA1P1 iron-sulfur cluster assembly 1 pseudogene 1 3.0000 0.0001
5 ENSG00000169306 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2.8074 0.0000
6 ENSG00000226383 LINC01876 long intergenic non-protein coding RNA 1876 2.8074 0.0002
7 ENSG00000253539 novel transcript 2.8074 0.0000
8 ENSG00000253912 ribosomal protein L18a (RPL18A) pseudogene 2.8074 0.0000
9 ENSG00000270779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 (DDX4) pseudogene 2.8074 0.0000
10 ENSG00000252255 RNU2-35P RNA, U2 small nuclear 35, pseudogene 2.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000277269 NA -1.8556 0.0000
63127 ENSG00000259081 novel transcript -1.8547 0.0000
63126 ENSG00000266554 LINC01443 long intergenic non-protein coding RNA 1443 -1.8545 0.0000
63125 ENSG00000254862 LGR4-AS1 LGR4 antisense RNA 1 -1.8542 0.0000
63124 ENSG00000187792 ZNF70 zinc finger protein 70 -1.8542 0.0000
63123 ENSG00000207243 Y RNA -1.8540 0.0000
63122 ENSG00000125484 GTF3C4 general transcription factor IIIC subunit 4 -1.8528 0.0000
63121 ENSG00000198743 SLC5A3 solute carrier family 5 member 3 -1.8526 0.0000
63120 ENSG00000183072 NKX2-5 NK2 homeobox 5 -1.8521 0.0000
63119 ENSG00000196660 SLC30A10 solute carrier family 30 member 10 -1.8515 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...