SHOGoiN Cell Methylome: GSM2481637

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481637


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M110Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255148 novel transcript 3.1699 0.0000
2 ENSG00000265494 novel transcript 3.0425 0.0000
3 ENSG00000207583 MIR606 microRNA 606 3.0000 0.0001
4 ENSG00000217416 ISCA1P1 iron-sulfur cluster assembly 1 pseudogene 1 3.0000 0.0001
5 ENSG00000169306 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2.8074 0.0000
6 ENSG00000226383 LINC01876 long intergenic non-protein coding RNA 1876 2.8074 0.0002
7 ENSG00000253539 novel transcript 2.8074 0.0000
8 ENSG00000253912 ribosomal protein L18a (RPL18A) pseudogene 2.8074 0.0000
9 ENSG00000270779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 (DDX4) pseudogene 2.8074 0.0000
10 ENSG00000252255 RNU2-35P RNA, U2 small nuclear 35, pseudogene 2.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000257563 microRNA 3180-3 -1.9412 0.0000
63340 ENSG00000187140 FOXD3 forkhead box D3 -1.9406 0.0000
63339 ENSG00000268230 novel transcript -1.9400 0.0000
63338 ENSG00000168310 IRF2 interferon regulatory factor 2 -1.9392 0.0000
63337 ENSG00000146521 LINC01558 long intergenic non-protein coding RNA 1558 -1.9392 0.0000
63336 ENSG00000224631 RPS27AP16 ribosomal protein S27a pseudogene 16 -1.9389 0.0000
63335 ENSG00000258303 novel transcript -1.9388 0.0000
63334 ENSG00000196196 HRCT1 histidine rich carboxyl terminus 1 -1.9384 0.0000
63333 ENSG00000281852 LINC00891 long intergenic non-protein coding RNA 891 -1.9380 0.0000
63332 ENSG00000252224 RNU4ATAC15P RNA, U4atac small nuclear 15, pseudogene -1.9368 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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