Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481637
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481637
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M110
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000255148
novel transcript
3.1699
0.0000
2
ENSG00000265494
novel transcript
3.0425
0.0000
3
ENSG00000207583
MIR606
microRNA 606
3.0000
0.0001
4
ENSG00000217416
ISCA1P1
iron-sulfur cluster assembly 1 pseudogene 1
3.0000
0.0001
5
ENSG00000169306
IL1RAPL1
interleukin 1 receptor accessory protein like 1
2.8074
0.0000
6
ENSG00000226383
LINC01876
long intergenic non-protein coding RNA 1876
2.8074
0.0002
7
ENSG00000253539
novel transcript
2.8074
0.0000
8
ENSG00000253912
ribosomal protein L18a (RPL18A) pseudogene
2.8074
0.0000
9
ENSG00000270779
DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 (DDX4) pseudogene
2.8074
0.0000
10
ENSG00000252255
RNU2-35P
RNA, U2 small nuclear 35, pseudogene
2.6962
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000277269
NA
-1.8556
0.0000
63127
ENSG00000259081
novel transcript
-1.8547
0.0000
63126
ENSG00000266554
LINC01443
long intergenic non-protein coding RNA 1443
-1.8545
0.0000
63125
ENSG00000254862
LGR4-AS1
LGR4 antisense RNA 1
-1.8542
0.0000
63124
ENSG00000187792
ZNF70
zinc finger protein 70
-1.8542
0.0000
63123
ENSG00000207243
Y RNA
-1.8540
0.0000
63122
ENSG00000125484
GTF3C4
general transcription factor IIIC subunit 4
-1.8528
0.0000
63121
ENSG00000198743
SLC5A3
solute carrier family 5 member 3
-1.8526
0.0000
63120
ENSG00000183072
NKX2-5
NK2 homeobox 5
-1.8521
0.0000
63119
ENSG00000196660
SLC30A10
solute carrier family 30 member 10
-1.8515
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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