Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481638

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481638


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M111Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199487 Y RNA 3.4594 0.0000
2 ENSG00000261970 solute carrier family 19, member 3 (SLC19A3) pseudogene 3.3219 0.0000
3 ENSG00000196611 MMP1 matrix metallopeptidase 1 3.1699 0.0000
4 ENSG00000234840 LINC01239 long intergenic non-protein coding RNA 1239 3.1699 0.0000
5 ENSG00000249619 HMGN1P13 high mobility group nucleosome binding domain 1 pseudogene 13 3.0000 0.0001
6 ENSG00000251099 high-mobility group nucleosome binding domain 1 (HMGN1) pseudogene 3.0000 0.0001
7 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 3.0000 0.0001
8 ENSG00000250084 GAGE family member pseudogene 2.8264 0.0000
9 ENSG00000233690 EBAG9P1 EBAG9 pseudogene 1 2.8259 0.0000
10 ENSG00000206769 RNU6-116P RNA, U6 small nuclear 116, pseudogene 2.8074 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000221093 NA -2.0277 0.0000
63127 ENSG00000102898 NUTF2 nuclear transport factor 2 -2.0268 0.0000
63126 ENSG00000225761 novel transcript -2.0263 0.0000
63125 ENSG00000270823 novel transcript, antisense to MEST -2.0262 0.0000
63124 ENSG00000199043 MIR335 microRNA 335 -2.0262 0.0000
63123 ENSG00000106484 MEST mesoderm specific transcript -2.0262 0.0000
63122 ENSG00000207639 MIR193B microRNA 193b -2.0259 0.0000
63121 ENSG00000170044 ZPLD1 zona pellucida like domain containing 1 -2.0253 0.0000
63120 ENSG00000255530 zinc finger with KRAB and SCAN domains 1 (ZKSCAN1) pseudogene -2.0253 0.0000
63119 ENSG00000185933 CALHM1 calcium homeostasis modulator 1 -2.0250 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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