SHOGoiN Cell Methylome: GSM2481638

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481638


Profile download
7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M111Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199487 NA 3.4594 0.0000
2 ENSG00000261970 solute carrier family 19, member 3 (SLC19A3) pseudogene 3.3219 0.0000
3 ENSG00000196611 MMP1 matrix metallopeptidase 1 3.1699 0.0000
4 ENSG00000234840 LINC01239 long intergenic non-protein coding RNA 1239 3.1699 0.0000
5 ENSG00000249619 HMGN1P13 high mobility group nucleosome binding domain 1 pseudogene 13 3.0000 0.0001
6 ENSG00000251099 high-mobility group nucleosome binding domain 1 (HMGN1) pseudogene 3.0000 0.0001
7 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 3.0000 0.0001
8 ENSG00000250084 GAGE family member pseudogene 2.8264 0.0000
9 ENSG00000233690 EBAG9P1 EBAG9 pseudogene 1 2.8259 0.0000
10 ENSG00000206769 RNU6-116P RNA, U6 small nuclear 116, pseudogene 2.8074 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000207523 SNORA66 small nucleolar RNA, H/ACA box 66 -2.1483 0.0000
63340 ENSG00000251891 RNU7-79P RNA, U7 small nuclear 79 pseudogene -2.1483 0.0000
63339 ENSG00000254546 MAS-related GPR, member X2 (MRGPRX2) pseudogene -2.1481 0.0000
63338 ENSG00000250562 RPL38P4 ribosomal protein L38 pseudogene 4 -2.1453 0.0000
63337 ENSG00000165462 PHOX2A paired like homeobox 2A -2.1439 0.0000
63336 ENSG00000267218 polymerase (RNA) mitochondrial (DNA directed) (POLRMT) pseudogene -2.1434 0.0020
63335 ENSG00000169895 SYAP1 synapse associated protein 1 -2.1424 0.0000
63334 ENSG00000114503 NCBP2 nuclear cap binding protein subunit 2 -2.1407 0.0000
63333 ENSG00000181191 PJA1 praja ring finger ubiquitin ligase 1 -2.1406 0.0014
10 ENSG00000206769 RNU6-116P RNA, U6 small nuclear 116, pseudogene 2.8074 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...