SHOGoiN Cell Methylome: GSM2481639

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481639


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M112Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232203 SLC25A6P2 solute carrier family 25 member 6 pseudogene 2 3.5850 0.0000
2 ENSG00000231877 novel transcript 3.4594 0.0000
3 ENSG00000241395 RN7SL344P RNA, 7SL, cytoplasmic 344, pseudogene 3.3219 0.0000
4 ENSG00000180919 OR56B4 olfactory receptor family 56 subfamily B member 4 3.1699 0.0000
5 ENSG00000187857 OR6C75 olfactory receptor family 6 subfamily C member 75 3.1699 0.0000
6 ENSG00000201665 RN7SKP6 RN7SK pseudogene 6 3.1699 0.0000
7 ENSG00000252815 RNU6-410P RNA, U6 small nuclear 410, pseudogene 3.1699 0.0000
8 ENSG00000219666 SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) (SUMO1) pseudogene 3.0304 0.0000
9 ENSG00000203859 HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 3.0000 0.0000
10 ENSG00000204193 TXNDC8 thioredoxin domain containing 8 3.0000 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000237407 novel transcript -2.0644 0.0000
63340 ENSG00000206142 FAM230H family with sequence similarity 230 member H -2.0644 0.0000
63339 ENSG00000243304 ribosomal protein S2 (RPS2) pseudogene -2.0637 0.0000
63338 ENSG00000226328 NUP50-DT NUP50 divergent transcript -2.0635 0.0000
63337 ENSG00000260992 DOCK9-DT DOCK9 divergent transcript -2.0632 0.0000
63336 ENSG00000222736 RNU4-6P RNA, U4 small nuclear 6, pseudogene -2.0629 0.0000
63335 ENSG00000126461 SCAF1 SR-related CTD associated factor 1 -2.0624 0.0000
63334 ENSG00000156531 PHF6 PHD finger protein 6 -2.0621 0.0000
63333 ENSG00000165943 MOAP1 modulator of apoptosis 1 -2.0621 0.0000
63332 ENSG00000235301 HLA-Z major histocompatibility complex, class I, Z (pseudogene) -2.0619 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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