Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481639
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481639
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M112
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000232203
SLC25A6P2
solute carrier family 25 member 6 pseudogene 2
3.5850
0.0000
2
ENSG00000231877
novel transcript
3.4594
0.0000
3
ENSG00000241395
RN7SL344P
RNA, 7SL, cytoplasmic 344, pseudogene
3.3219
0.0000
4
ENSG00000180919
OR56B4
olfactory receptor family 56 subfamily B member 4
3.1699
0.0000
5
ENSG00000187857
OR6C75
olfactory receptor family 6 subfamily C member 75
3.1699
0.0000
6
ENSG00000201665
RN7SKP6
RN7SK pseudogene 6
3.1699
0.0000
7
ENSG00000252815
RNU6-410P
RNA, U6 small nuclear 410, pseudogene
3.1699
0.0000
8
ENSG00000219666
SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) (SUMO1) pseudogene
3.0304
0.0000
9
ENSG00000203859
HSD3B2
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
3.0000
0.0000
10
ENSG00000204193
TXNDC8
thioredoxin domain containing 8
3.0000
0.0001
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000222413
RN7SKP125
RN7SK pseudogene 125
-2.0000
0.1238
63127
ENSG00000220730
H3P27
H3 histone pseudogene 27
-2.0000
0.0456
63126
ENSG00000219507
FTH1P8
ferritin heavy chain 1 pseudogene 8
-2.0000
0.5769
63125
ENSG00000218596
ribosomal protein S15a (RPS15A) pseudogene
-2.0000
0.0111
63124
ENSG00000217135
high mobility group nucleosome binding domain 1 (HMGN1) pseudogene
-2.0000
0.5769
63123
ENSG00000214960
CRPPA
CDP-L-ribitol pyrophosphorylase A
-2.0000
0.5769
63122
ENSG00000213493
ACTN4P1
actinin alpha 4 pseudogene 1
-2.0000
0.3478
63121
ENSG00000213355
CNN2P8
calponin 2 pseudogene 8
-2.0000
0.5769
63120
ENSG00000212226
RNU6-907P
RNA, U6 small nuclear 907, pseudogene
-2.0000
0.5769
63119
ENSG00000207441
RNU6-21P
RNA, U6 small nuclear 21, pseudogene
-2.0000
0.0041
SOM(Self Organization Map)
Expression around clicked position:
full
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Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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