SHOGoiN Cell Methylome: GSM2481639
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481639 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M112 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000232203 | SLC25A6P2 | solute carrier family 25 member 6 pseudogene 2 | 3.5850 | 0.0000 |
| 2 | ENSG00000231877 | novel transcript | 3.4594 | 0.0000 | |
| 3 | ENSG00000241395 | RN7SL344P | RNA, 7SL, cytoplasmic 344, pseudogene | 3.3219 | 0.0000 |
| 4 | ENSG00000180919 | OR56B4 | olfactory receptor family 56 subfamily B member 4 | 3.1699 | 0.0000 |
| 5 | ENSG00000187857 | OR6C75 | olfactory receptor family 6 subfamily C member 75 | 3.1699 | 0.0000 |
| 6 | ENSG00000201665 | RN7SKP6 | RN7SK pseudogene 6 | 3.1699 | 0.0000 |
| 7 | ENSG00000252815 | RNU6-410P | RNA, U6 small nuclear 410, pseudogene | 3.1699 | 0.0000 |
| 8 | ENSG00000219666 | SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) (SUMO1) pseudogene | 3.0304 | 0.0000 | |
| 9 | ENSG00000203859 | HSD3B2 | hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 | 3.0000 | 0.0000 |
| 10 | ENSG00000204193 | TXNDC8 | thioredoxin domain containing 8 | 3.0000 | 0.0001 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000237407 | novel transcript | -2.0644 | 0.0000 | |
| 63340 | ENSG00000206142 | FAM230H | family with sequence similarity 230 member H | -2.0644 | 0.0000 |
| 63339 | ENSG00000243304 | ribosomal protein S2 (RPS2) pseudogene | -2.0637 | 0.0000 | |
| 63338 | ENSG00000226328 | NUP50-DT | NUP50 divergent transcript | -2.0635 | 0.0000 |
| 63337 | ENSG00000260992 | DOCK9-DT | DOCK9 divergent transcript | -2.0632 | 0.0000 |
| 63336 | ENSG00000222736 | RNU4-6P | RNA, U4 small nuclear 6, pseudogene | -2.0629 | 0.0000 |
| 63335 | ENSG00000126461 | SCAF1 | SR-related CTD associated factor 1 | -2.0624 | 0.0000 |
| 63334 | ENSG00000156531 | PHF6 | PHD finger protein 6 | -2.0621 | 0.0000 |
| 63333 | ENSG00000165943 | MOAP1 | modulator of apoptosis 1 | -2.0621 | 0.0000 |
| 63332 | ENSG00000235301 | HLA-Z | major histocompatibility complex, class I, Z (pseudogene) | -2.0619 | 0.0000 |
