Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481639

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481639 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M112	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000232203	SLC25A6P2	solute carrier family 25 member 6 pseudogene 2	3.5850	0.0000
2	ENSG00000231877		novel transcript	3.4594	0.0000
3	ENSG00000241395	RN7SL344P	RNA, 7SL, cytoplasmic 344, pseudogene	3.3219	0.0000
4	ENSG00000180919	OR56B4	olfactory receptor family 56 subfamily B member 4	3.1699	0.0000
5	ENSG00000187857	OR6C75	olfactory receptor family 6 subfamily C member 75	3.1699	0.0000
6	ENSG00000201665	RN7SKP6	RN7SK pseudogene 6	3.1699	0.0000
7	ENSG00000252815	RNU6-410P	RNA, U6 small nuclear 410, pseudogene	3.1699	0.0000
8	ENSG00000219666		SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) (SUMO1) pseudogene	3.0304	0.0000
9	ENSG00000203859	HSD3B2	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	3.0000	0.0000
10	ENSG00000204193	TXNDC8	thioredoxin domain containing 8	3.0000	0.0001

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000222413	RN7SKP125	RN7SK pseudogene 125	-2.0000	0.1238
63127	ENSG00000220730	H3P27	H3 histone pseudogene 27	-2.0000	0.0456
63126	ENSG00000219507	FTH1P8	ferritin heavy chain 1 pseudogene 8	-2.0000	0.5769
63125	ENSG00000218596		ribosomal protein S15a (RPS15A) pseudogene	-2.0000	0.0111
63124	ENSG00000217135		high mobility group nucleosome binding domain 1 (HMGN1) pseudogene	-2.0000	0.5769
63123	ENSG00000214960	CRPPA	CDP-L-ribitol pyrophosphorylase A	-2.0000	0.5769
63122	ENSG00000213493	ACTN4P1	actinin alpha 4 pseudogene 1	-2.0000	0.3478
63121	ENSG00000213355	CNN2P8	calponin 2 pseudogene 8	-2.0000	0.5769
63120	ENSG00000212226	RNU6-907P	RNA, U6 small nuclear 907, pseudogene	-2.0000	0.5769
63119	ENSG00000207441	RNU6-21P	RNA, U6 small nuclear 21, pseudogene	-2.0000	0.0041

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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