Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481640

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481640 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M113	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000201140	RN7SKP128	RN7SK pseudogene 128	3.0000	0.0001
2	ENSG00000231861	OR5K2	olfactory receptor family 5 subfamily K member 2	2.9037	0.0000
3	ENSG00000228209	PNPP1	PNP pseudogene 1	2.8074	0.0005
4	ENSG00000231688	RPL21P43	ribosomal protein L21 pseudogene 43	2.8074	0.0000
5	ENSG00000270924		novel IGHV pseudogene	2.8074	0.0005
6	ENSG00000236880	RPS26P57	ribosomal protein S26 pseudogene 57	2.6230	0.0000
7	ENSG00000046647	GEMIN8	gem nuclear organelle associated protein 8	2.5850	0.0018
8	ENSG00000235403		novel transcript	2.5850	0.0000
9	ENSG00000237478		pseudogene similar to part of ribosomal protein S11 (RPS11)	2.5850	0.0018
10	ENSG00000253334		novel transcript, antisense to SNX16	2.5850	0.0018

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000236848	RPL23AP95	ribosomal protein L23a pseudogene 95	-1.8070	0.0000
63127	ENSG00000011007	ELOA	elongin A	-1.8062	0.0000
63126	ENSG00000211966	IGHV5-51	immunoglobulin heavy variable 5-51	-1.8058	0.0000
63125	ENSG00000104848	KCNA7	potassium voltage-gated channel subfamily A member 7	-1.8056	0.0000
63124	ENSG00000106367	AP1S1	adaptor related protein complex 1 subunit sigma 1	-1.8052	0.0000
63123	ENSG00000253187	HOXA10-AS	HOXA10 antisense RNA	-1.8049	0.0000
63122	ENSG00000112852	PCDHB2	protocadherin beta 2	-1.8045	0.0000
63121	ENSG00000275897		novel transcript	-1.8045	0.0000
63120	ENSG00000152315	KCNK13	potassium two pore domain channel subfamily K member 13	-1.8044	0.0000
63119	ENSG00000169230	PRELID1	PRELI domain containing 1	-1.8034	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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