Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481640
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481640
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M113
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000201140
RN7SKP128
RN7SK pseudogene 128
3.0000
0.0001
2
ENSG00000231861
OR5K2
olfactory receptor family 5 subfamily K member 2
2.9037
0.0000
3
ENSG00000228209
PNPP1
PNP pseudogene 1
2.8074
0.0005
4
ENSG00000231688
RPL21P43
ribosomal protein L21 pseudogene 43
2.8074
0.0000
5
ENSG00000270924
novel IGHV pseudogene
2.8074
0.0005
6
ENSG00000236880
RPS26P57
ribosomal protein S26 pseudogene 57
2.6230
0.0000
7
ENSG00000046647
GEMIN8
gem nuclear organelle associated protein 8
2.5850
0.0018
8
ENSG00000235403
novel transcript
2.5850
0.0000
9
ENSG00000237478
pseudogene similar to part of ribosomal protein S11 (RPS11)
2.5850
0.0018
10
ENSG00000253334
novel transcript, antisense to SNX16
2.5850
0.0018
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000236848
RPL23AP95
ribosomal protein L23a pseudogene 95
-1.8070
0.0000
63127
ENSG00000011007
ELOA
elongin A
-1.8062
0.0000
63126
ENSG00000211966
IGHV5-51
immunoglobulin heavy variable 5-51
-1.8058
0.0000
63125
ENSG00000104848
KCNA7
potassium voltage-gated channel subfamily A member 7
-1.8056
0.0000
63124
ENSG00000106367
AP1S1
adaptor related protein complex 1 subunit sigma 1
-1.8052
0.0000
63123
ENSG00000253187
HOXA10-AS
HOXA10 antisense RNA
-1.8049
0.0000
63122
ENSG00000112852
PCDHB2
protocadherin beta 2
-1.8045
0.0000
63121
ENSG00000275897
novel transcript
-1.8045
0.0000
63120
ENSG00000152315
KCNK13
potassium two pore domain channel subfamily K member 13
-1.8044
0.0000
63119
ENSG00000169230
PRELID1
PRELI domain containing 1
-1.8034
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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