SHOGoiN Cell Methylome: GSM2481640
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481640 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M113 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000201140 | RN7SKP128 | RN7SK pseudogene 128 | 3.0000 | 0.0001 |
| 2 | ENSG00000231861 | OR5K2 | olfactory receptor family 5 subfamily K member 2 | 2.9037 | 0.0000 |
| 3 | ENSG00000228209 | nucleoside phosphorylase (NP) pseudogene | 2.8074 | 0.0005 | |
| 4 | ENSG00000231688 | RPL21P43 | ribosomal protein L21 pseudogene 43 | 2.8074 | 0.0000 |
| 5 | ENSG00000270924 | novel IGHV pseudogene | 2.8074 | 0.0005 | |
| 6 | ENSG00000236880 | ribosomal protein (RPS26) pseudogene | 2.6230 | 0.0000 | |
| 7 | ENSG00000046647 | GEMIN8 | gem nuclear organelle associated protein 8 | 2.5850 | 0.0018 |
| 8 | ENSG00000235403 | novel transcript | 2.5850 | 0.0000 | |
| 9 | ENSG00000237478 | pseudogene similar to part of ribosomal protein S11 (RPS11) | 2.5850 | 0.0018 | |
| 10 | ENSG00000253334 | novel transcript, antisense to SNX16 | 2.5850 | 0.0018 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63340 | ENSG00000211968 | IGHV1-58 | immunoglobulin heavy variable 1-58 | -1.8825 | 0.0000 |
| 63339 | ENSG00000167494 | NOS2P2 | nitric oxide synthase 2 pseudogene 2 | -1.8821 | 0.0000 |
| 63338 | ENSG00000148053 | NTRK2 | neurotrophic receptor tyrosine kinase 2 | -1.8821 | 0.0000 |
| 63337 | ENSG00000259906 | novel transcript | -1.8819 | 0.0000 | |
| 63336 | ENSG00000172399 | MYOZ2 | myozenin 2 | -1.8814 | 0.0034 |
| 63335 | ENSG00000214128 | TMEM213 | transmembrane protein 213 | -1.8813 | 0.0033 |
| 63334 | ENSG00000206792 | NA | -1.8813 | 0.0691 | |
| 63333 | ENSG00000212468 | RNU6-754P | RNA, U6 small nuclear 754, pseudogene | -1.8812 | 0.0000 |
| 63332 | ENSG00000237149 | ZNF503-AS2 | ZNF503 antisense RNA 2 | -1.8810 | 0.0000 |
| 10 | ENSG00000253334 | novel transcript, antisense to SNX16 | 2.5850 | 0.0018 |
