Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481640

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481640


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M113Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201140 RN7SKP128 RN7SK pseudogene 128 3.0000 0.0001
2 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
3 ENSG00000228209 PNPP1 PNP pseudogene 1 2.8074 0.0005
4 ENSG00000231688 RPL21P43 ribosomal protein L21 pseudogene 43 2.8074 0.0000
5 ENSG00000270924 novel IGHV pseudogene 2.8074 0.0005
6 ENSG00000236880 RPS26P57 ribosomal protein S26 pseudogene 57 2.6230 0.0000
7 ENSG00000046647 GEMIN8 gem nuclear organelle associated protein 8 2.5850 0.0018
8 ENSG00000235403 novel transcript 2.5850 0.0000
9 ENSG00000237478 pseudogene similar to part of ribosomal protein S11 (RPS11) 2.5850 0.0018
10 ENSG00000253334 novel transcript, antisense to SNX16 2.5850 0.0018

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000236848 RPL23AP95 ribosomal protein L23a pseudogene 95 -1.8070 0.0000
63127 ENSG00000011007 ELOA elongin A -1.8062 0.0000
63126 ENSG00000211966 IGHV5-51 immunoglobulin heavy variable 5-51 -1.8058 0.0000
63125 ENSG00000104848 KCNA7 potassium voltage-gated channel subfamily A member 7 -1.8056 0.0000
63124 ENSG00000106367 AP1S1 adaptor related protein complex 1 subunit sigma 1 -1.8052 0.0000
63123 ENSG00000253187 HOXA10-AS HOXA10 antisense RNA -1.8049 0.0000
63122 ENSG00000112852 PCDHB2 protocadherin beta 2 -1.8045 0.0000
63121 ENSG00000275897 novel transcript -1.8045 0.0000
63120 ENSG00000152315 KCNK13 potassium two pore domain channel subfamily K member 13 -1.8044 0.0000
63119 ENSG00000169230 PRELID1 PRELI domain containing 1 -1.8034 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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