SHOGoiN Cell Methylome: GSM2481640

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481640


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M113Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201140 RN7SKP128 RN7SK pseudogene 128 3.0000 0.0001
2 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
3 ENSG00000228209 nucleoside phosphorylase (NP) pseudogene 2.8074 0.0005
4 ENSG00000231688 RPL21P43 ribosomal protein L21 pseudogene 43 2.8074 0.0000
5 ENSG00000270924 novel IGHV pseudogene 2.8074 0.0005
6 ENSG00000236880 ribosomal protein (RPS26) pseudogene 2.6230 0.0000
7 ENSG00000046647 GEMIN8 gem nuclear organelle associated protein 8 2.5850 0.0018
8 ENSG00000235403 novel transcript 2.5850 0.0000
9 ENSG00000237478 pseudogene similar to part of ribosomal protein S11 (RPS11) 2.5850 0.0018
10 ENSG00000253334 novel transcript, antisense to SNX16 2.5850 0.0018

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63340 ENSG00000211968 IGHV1-58 immunoglobulin heavy variable 1-58 -1.8825 0.0000
63339 ENSG00000167494 NOS2P2 nitric oxide synthase 2 pseudogene 2 -1.8821 0.0000
63338 ENSG00000148053 NTRK2 neurotrophic receptor tyrosine kinase 2 -1.8821 0.0000
63337 ENSG00000259906 novel transcript -1.8819 0.0000
63336 ENSG00000172399 MYOZ2 myozenin 2 -1.8814 0.0034
63335 ENSG00000214128 TMEM213 transmembrane protein 213 -1.8813 0.0033
63334 ENSG00000206792 NA -1.8813 0.0691
63333 ENSG00000212468 RNU6-754P RNA, U6 small nuclear 754, pseudogene -1.8812 0.0000
63332 ENSG00000237149 ZNF503-AS2 ZNF503 antisense RNA 2 -1.8810 0.0000
10 ENSG00000253334 novel transcript, antisense to SNX16 2.5850 0.0018

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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