Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481641
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481641
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M114
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000273010
novel transcript, antisense to LRIF1
3.1699
0.0000
2
ENSG00000231255
novel transcript
2.8074
0.0004
3
ENSG00000242922
RPL21P104
ribosomal protein L21 pseudogene 104
2.8074
0.0004
4
ENSG00000280185
tec
2.8074
0.0004
5
ENSG00000232039
DEFT1P2
defensin theta 1, pseudogene 2
2.7500
0.0000
6
ENSG00000173285
OR10K1
olfactory receptor family 10 subfamily K member 1
2.5850
0.0016
7
ENSG00000222202
RNU4-26P
RNA, U4 small nuclear 26, pseudogene
2.5850
0.0016
8
ENSG00000249806
novel transcript
2.5850
0.0016
9
ENSG00000254352
chromosome 4 open reading frame 46 (C4orf46) pseudogene
2.5850
0.0000
10
ENSG00000280144
tec
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000160326
SLC2A6
solute carrier family 2 member 6
-1.7253
0.0000
63127
ENSG00000224136
splicing factor, arginine/serine-rich 3 (SFRS3) pseudogene
-1.7248
0.0000
63126
ENSG00000170759
KIF5B
kinesin family member 5B
-1.7247
0.0000
63125
ENSG00000250510
GPR162
G protein-coupled receptor 162
-1.7246
0.0000
63124
ENSG00000237429
novel transcript
-1.7244
0.0000
63123
ENSG00000273703
H2BC14
H2B clustered histone 14
-1.7241
0.0000
63122
ENSG00000224870
MRPL20-AS1
MRPL20 antisense RNA 1
-1.7238
0.0000
63121
ENSG00000247708
STX18-AS1
STX18 antisense RNA 1 (head to head)
-1.7237
0.0000
63120
ENSG00000224965
LINC02586
long intergenic non-protein coding RNA 2586
-1.7236
0.0000
63119
ENSG00000148730
EIF4EBP2
eukaryotic translation initiation factor 4E binding protein 2
-1.7234
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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