Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481641

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481641 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M114	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000273010		novel transcript, antisense to LRIF1	3.1699	0.0000
2	ENSG00000231255		novel transcript	2.8074	0.0004
3	ENSG00000242922	RPL21P104	ribosomal protein L21 pseudogene 104	2.8074	0.0004
4	ENSG00000280185		tec	2.8074	0.0004
5	ENSG00000232039	DEFT1P2	defensin theta 1, pseudogene 2	2.7500	0.0000
6	ENSG00000173285	OR10K1	olfactory receptor family 10 subfamily K member 1	2.5850	0.0016
7	ENSG00000222202	RNU4-26P	RNA, U4 small nuclear 26, pseudogene	2.5850	0.0016
8	ENSG00000249806		novel transcript	2.5850	0.0016
9	ENSG00000254352		chromosome 4 open reading frame 46 (C4orf46) pseudogene	2.5850	0.0000
10	ENSG00000280144		tec	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000160326	SLC2A6	solute carrier family 2 member 6	-1.7253	0.0000
63127	ENSG00000224136		splicing factor, arginine/serine-rich 3 (SFRS3) pseudogene	-1.7248	0.0000
63126	ENSG00000170759	KIF5B	kinesin family member 5B	-1.7247	0.0000
63125	ENSG00000250510	GPR162	G protein-coupled receptor 162	-1.7246	0.0000
63124	ENSG00000237429		novel transcript	-1.7244	0.0000
63123	ENSG00000273703	H2BC14	H2B clustered histone 14	-1.7241	0.0000
63122	ENSG00000224870	MRPL20-AS1	MRPL20 antisense RNA 1	-1.7238	0.0000
63121	ENSG00000247708	STX18-AS1	STX18 antisense RNA 1 (head to head)	-1.7237	0.0000
63120	ENSG00000224965	LINC02586	long intergenic non-protein coding RNA 2586	-1.7236	0.0000
63119	ENSG00000148730	EIF4EBP2	eukaryotic translation initiation factor 4E binding protein 2	-1.7234	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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