Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481641

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481641


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M114Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273010 novel transcript, antisense to LRIF1 3.1699 0.0000
2 ENSG00000231255 novel transcript 2.8074 0.0004
3 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.8074 0.0004
4 ENSG00000280185 tec 2.8074 0.0004
5 ENSG00000232039 DEFT1P2 defensin theta 1, pseudogene 2 2.7500 0.0000
6 ENSG00000173285 OR10K1 olfactory receptor family 10 subfamily K member 1 2.5850 0.0016
7 ENSG00000222202 RNU4-26P RNA, U4 small nuclear 26, pseudogene 2.5850 0.0016
8 ENSG00000249806 novel transcript 2.5850 0.0016
9 ENSG00000254352 chromosome 4 open reading frame 46 (C4orf46) pseudogene 2.5850 0.0000
10 ENSG00000280144 tec 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000160326 SLC2A6 solute carrier family 2 member 6 -1.7253 0.0000
63127 ENSG00000224136 splicing factor, arginine/serine-rich 3 (SFRS3) pseudogene -1.7248 0.0000
63126 ENSG00000170759 KIF5B kinesin family member 5B -1.7247 0.0000
63125 ENSG00000250510 GPR162 G protein-coupled receptor 162 -1.7246 0.0000
63124 ENSG00000237429 novel transcript -1.7244 0.0000
63123 ENSG00000273703 H2BC14 H2B clustered histone 14 -1.7241 0.0000
63122 ENSG00000224870 MRPL20-AS1 MRPL20 antisense RNA 1 -1.7238 0.0000
63121 ENSG00000247708 STX18-AS1 STX18 antisense RNA 1 (head to head) -1.7237 0.0000
63120 ENSG00000224965 LINC02586 long intergenic non-protein coding RNA 2586 -1.7236 0.0000
63119 ENSG00000148730 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 -1.7234 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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