SHOGoiN Cell Methylome: GSM2481641
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481641 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M114 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000273010 | novel transcript, antisense to LRIF1 | 3.1699 | 0.0000 | |
| 2 | ENSG00000231255 | novel transcript | 2.8074 | 0.0004 | |
| 3 | ENSG00000242922 | RPL21P104 | ribosomal protein L21 pseudogene 104 | 2.8074 | 0.0004 |
| 4 | ENSG00000280185 | tec | 2.8074 | 0.0004 | |
| 5 | ENSG00000232039 | DEFT1P2 | defensin theta 1, pseudogene 2 | 2.7500 | 0.0000 |
| 6 | ENSG00000173285 | OR10K1 | olfactory receptor family 10 subfamily K member 1 | 2.5850 | 0.0016 |
| 7 | ENSG00000222202 | RNU4-26P | RNA, U4 small nuclear 26, pseudogene | 2.5850 | 0.0016 |
| 8 | ENSG00000249806 | novel transcript | 2.5850 | 0.0016 | |
| 9 | ENSG00000254352 | chromosome 4 open reading frame 46 (C4orf46) pseudogene | 2.5850 | 0.0000 | |
| 10 | ENSG00000280144 | tec | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000272121 | novel transcript | -1.7959 | 0.0000 | |
| 63340 | ENSG00000279472 | novel transcript | -1.7958 | 0.0000 | |
| 63339 | ENSG00000120322 | PCDHB8 | protocadherin beta 8 | -1.7958 | 0.0000 |
| 63338 | ENSG00000164051 | CCDC51 | coiled-coil domain containing 51 | -1.7953 | 0.0000 |
| 63337 | ENSG00000284200 | MIR6847 | microRNA 6847 | -1.7949 | 0.0000 |
| 63336 | ENSG00000235078 | novel transcript, antisense to ADI1 | -1.7938 | 0.0000 | |
| 63335 | ENSG00000197951 | ZNF71 | zinc finger protein 71 | -1.7935 | 0.0000 |
| 63334 | ENSG00000276609 | NA | -1.7934 | 0.0000 | |
| 63333 | ENSG00000119283 | TRIM67 | tripartite motif containing 67 | -1.7931 | 0.0000 |
| 63332 | ENSG00000278305 | novel transcript | -1.7925 | 0.3319 |
