Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481642

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481642 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M115	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000230942	HMGN1P5	high mobility group nucleosome binding domain 1 pseudogene 5	2.8074	0.0000
2	ENSG00000201196		Y RNA	2.5850	0.0006
3	ENSG00000222094	RNU2-65P	RNA, U2 small nuclear 65, pseudogene	2.3219	0.0027
4	ENSG00000222617	RN7SKP254	RN7SK pseudogene 254	2.3219	0.0000
5	ENSG00000225514	MTND1P34	MT-ND1 pseudogene 34	2.3219	0.0027
6	ENSG00000227249		poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene	2.3219	0.0027
7	ENSG00000231900	GOT2P1	GOT2 pseudogene 1	2.3219	0.0027
8	ENSG00000234105		novel transcript	2.3219	0.0027
9	ENSG00000252990	RNU1-54P	RNA, U1 small nuclear 54, pseudogene	2.3219	0.0027
10	ENSG00000254708	MMADHCP2	MMADHC pseudogene 2	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000273565		novel transcript	-1.7091	0.0000
63127	ENSG00000231788	RPL31P50	ribosomal protein L31 pseudogene 50	-1.7088	0.0000
63126	ENSG00000204967	PCDHA4	protocadherin alpha 4	-1.7088	0.0000
63125	ENSG00000154429	CCSAP	centriole, cilia and spindle associated protein	-1.7086	0.0000
63124	ENSG00000254158		F-box and WD repeat domain containing 2 (FBXW2) pseudogene	-1.7083	0.0000
63123	ENSG00000245522	LINC02709	long intergenic non-protein coding RNA 2709	-1.7070	0.0000
63122	ENSG00000270889	PPP1R14BP4	protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4	-1.7057	0.0000
63121	ENSG00000170390	DCLK2	doublecortin like kinase 2	-1.7053	0.0000
63120	ENSG00000156150	ALX3	ALX homeobox 3	-1.7050	0.0000
10	ENSG00000254708	MMADHCP2	MMADHC pseudogene 2	2.3219	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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