Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481642

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481642


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M115Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230942 HMGN1P5 high mobility group nucleosome binding domain 1 pseudogene 5 2.8074 0.0000
2 ENSG00000201196 Y RNA 2.5850 0.0006
3 ENSG00000222094 RNU2-65P RNA, U2 small nuclear 65, pseudogene 2.3219 0.0027
4 ENSG00000222617 RN7SKP254 RN7SK pseudogene 254 2.3219 0.0000
5 ENSG00000225514 MTND1P34 MT-ND1 pseudogene 34 2.3219 0.0027
6 ENSG00000227249 poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene 2.3219 0.0027
7 ENSG00000231900 GOT2P1 GOT2 pseudogene 1 2.3219 0.0027
8 ENSG00000234105 novel transcript 2.3219 0.0027
9 ENSG00000252990 RNU1-54P RNA, U1 small nuclear 54, pseudogene 2.3219 0.0027
10 ENSG00000254708 MMADHCP2 MMADHC pseudogene 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000273565 novel transcript -1.7091 0.0000
63127 ENSG00000231788 RPL31P50 ribosomal protein L31 pseudogene 50 -1.7088 0.0000
63126 ENSG00000204967 PCDHA4 protocadherin alpha 4 -1.7088 0.0000
63125 ENSG00000154429 CCSAP centriole, cilia and spindle associated protein -1.7086 0.0000
63124 ENSG00000254158 F-box and WD repeat domain containing 2 (FBXW2) pseudogene -1.7083 0.0000
63123 ENSG00000245522 LINC02709 long intergenic non-protein coding RNA 2709 -1.7070 0.0000
63122 ENSG00000270889 PPP1R14BP4 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4 -1.7057 0.0000
63121 ENSG00000170390 DCLK2 doublecortin like kinase 2 -1.7053 0.0000
63120 ENSG00000156150 ALX3 ALX homeobox 3 -1.7050 0.0000
10 ENSG00000254708 MMADHCP2 MMADHC pseudogene 2 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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