Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481642
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481642
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M115
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000230942
HMGN1P5
high mobility group nucleosome binding domain 1 pseudogene 5
2.8074
0.0000
2
ENSG00000201196
Y RNA
2.5850
0.0006
3
ENSG00000222094
RNU2-65P
RNA, U2 small nuclear 65, pseudogene
2.3219
0.0027
4
ENSG00000222617
RN7SKP254
RN7SK pseudogene 254
2.3219
0.0000
5
ENSG00000225514
MTND1P34
MT-ND1 pseudogene 34
2.3219
0.0027
6
ENSG00000227249
poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene
2.3219
0.0027
7
ENSG00000231900
GOT2P1
GOT2 pseudogene 1
2.3219
0.0027
8
ENSG00000234105
novel transcript
2.3219
0.0027
9
ENSG00000252990
RNU1-54P
RNA, U1 small nuclear 54, pseudogene
2.3219
0.0027
10
ENSG00000254708
MMADHCP2
MMADHC pseudogene 2
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000273565
novel transcript
-1.7091
0.0000
63127
ENSG00000231788
RPL31P50
ribosomal protein L31 pseudogene 50
-1.7088
0.0000
63126
ENSG00000204967
PCDHA4
protocadherin alpha 4
-1.7088
0.0000
63125
ENSG00000154429
CCSAP
centriole, cilia and spindle associated protein
-1.7086
0.0000
63124
ENSG00000254158
F-box and WD repeat domain containing 2 (FBXW2) pseudogene
-1.7083
0.0000
63123
ENSG00000245522
LINC02709
long intergenic non-protein coding RNA 2709
-1.7070
0.0000
63122
ENSG00000270889
PPP1R14BP4
protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4
-1.7057
0.0000
63121
ENSG00000170390
DCLK2
doublecortin like kinase 2
-1.7053
0.0000
63120
ENSG00000156150
ALX3
ALX homeobox 3
-1.7050
0.0000
10
ENSG00000254708
MMADHCP2
MMADHC pseudogene 2
2.3219
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...