SHOGoiN Cell Methylome: GSM2481642
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481642 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M115 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000230942 | HMGN1P5 | high mobility group nucleosome binding domain 1 pseudogene 5 | 2.8074 | 0.0000 |
| 2 | ENSG00000201196 | NA | 2.5850 | 0.0006 | |
| 3 | ENSG00000222094 | RNU2-65P | RNA, U2 small nuclear 65, pseudogene | 2.3219 | 0.0027 |
| 4 | ENSG00000222617 | RN7SKP254 | RN7SK pseudogene 254 | 2.3219 | 0.0000 |
| 5 | ENSG00000225514 | MTND1P34 | MT-ND1 pseudogene 34 | 2.3219 | 0.0027 |
| 6 | ENSG00000227249 | poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene | 2.3219 | 0.0027 | |
| 7 | ENSG00000231900 | GOT2P1 | glutamic-oxaloacetic transaminase 2 pseudogene 1 | 2.3219 | 0.0027 |
| 8 | ENSG00000234105 | novel transcript | 2.3219 | 0.0027 | |
| 9 | ENSG00000252990 | RNU1-54P | RNA, U1 small nuclear 54, pseudogene | 2.3219 | 0.0027 |
| 10 | ENSG00000254708 | methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria (MMADHC) pseudogene | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000109536 | FRG1 | FSHD region gene 1 | -1.7896 | 0.0000 |
| 63340 | ENSG00000102030 | NAA10 | N(alpha)-acetyltransferase 10, NatA catalytic subunit | -1.7885 | 0.0000 |
| 63339 | ENSG00000179673 | RPRML | reprimo like | -1.7872 | 0.0000 |
| 63338 | ENSG00000169609 | C15orf40 | chromosome 15 open reading frame 40 | -1.7869 | 0.0000 |
| 63337 | ENSG00000273172 | LINC02091 | long intergenic non-protein coding RNA 2091 | -1.7852 | 0.0000 |
| 63336 | ENSG00000163064 | EN1 | engrailed homeobox 1 | -1.7848 | 0.0000 |
| 63335 | ENSG00000266066 | POLRMTP1 | RNA polymerase mitochondrial pseudogene 1 | -1.7836 | 0.0000 |
| 63334 | ENSG00000178645 | C10orf53 | chromosome 10 open reading frame 53 | -1.7834 | 0.0000 |
| 63333 | ENSG00000229107 | ABHD17AP4 | abhydrolase domain containing 17A pseudogene P4 | -1.7834 | 0.0000 |
| 63332 | ENSG00000012660 | ELOVL5 | ELOVL fatty acid elongase 5 | -1.7832 | 0.0000 |
