SHOGoiN Cell Methylome: GSM2481642

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481642


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M115Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230942 HMGN1P5 high mobility group nucleosome binding domain 1 pseudogene 5 2.8074 0.0000
2 ENSG00000201196 NA 2.5850 0.0006
3 ENSG00000222094 RNU2-65P RNA, U2 small nuclear 65, pseudogene 2.3219 0.0027
4 ENSG00000222617 RN7SKP254 RN7SK pseudogene 254 2.3219 0.0000
5 ENSG00000225514 MTND1P34 MT-ND1 pseudogene 34 2.3219 0.0027
6 ENSG00000227249 poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene 2.3219 0.0027
7 ENSG00000231900 GOT2P1 glutamic-oxaloacetic transaminase 2 pseudogene 1 2.3219 0.0027
8 ENSG00000234105 novel transcript 2.3219 0.0027
9 ENSG00000252990 RNU1-54P RNA, U1 small nuclear 54, pseudogene 2.3219 0.0027
10 ENSG00000254708 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria (MMADHC) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000109536 FRG1 FSHD region gene 1 -1.7896 0.0000
63340 ENSG00000102030 NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit -1.7885 0.0000
63339 ENSG00000179673 RPRML reprimo like -1.7872 0.0000
63338 ENSG00000169609 C15orf40 chromosome 15 open reading frame 40 -1.7869 0.0000
63337 ENSG00000273172 LINC02091 long intergenic non-protein coding RNA 2091 -1.7852 0.0000
63336 ENSG00000163064 EN1 engrailed homeobox 1 -1.7848 0.0000
63335 ENSG00000266066 POLRMTP1 RNA polymerase mitochondrial pseudogene 1 -1.7836 0.0000
63334 ENSG00000178645 C10orf53 chromosome 10 open reading frame 53 -1.7834 0.0000
63333 ENSG00000229107 ABHD17AP4 abhydrolase domain containing 17A pseudogene P4 -1.7834 0.0000
63332 ENSG00000012660 ELOVL5 ELOVL fatty acid elongase 5 -1.7832 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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