Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481643
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481643
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP074598
SRP074598_M116
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
8-cell embryo
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000199601
RNU6-562P
RNA, U6 small nuclear 562, pseudogene
3.1699
0.0000
2
ENSG00000229661
BUD31P2
BUD31 homolog pseudogene 2
3.1699
0.0000
3
ENSG00000259457
novel transcript
3.0000
0.0001
4
ENSG00000280348
TEC
3.0000
0.0000
5
ENSG00000226847
PRPS1P1
phosphoribosyl pyrophosphate synthetase 1 pseudogene 1
2.9908
0.0000
6
ENSG00000250905
novel transcript
2.8497
0.0000
7
ENSG00000271963
novel transcript, antisense to ZNF891
2.8333
0.0000
8
ENSG00000151418
ATP6V1G3
ATPase H+ transporting V1 subunit G3
2.8074
0.0004
9
ENSG00000220091
LAP3P1
leucine aminopeptidase 3 pseudogene 1
2.8074
0.0004
10
ENSG00000249284
PC4 and SFRS1 interacting protein 1 (PSIP1) pseudogene
2.8074
0.0004
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000171557
FGG
fibrinogen gamma chain
-2.0000
0.3529
63127
ENSG00000163216
SPRR2D
small proline rich protein 2D
-2.0000
0.5690
63126
ENSG00000162739
SLAMF6
SLAM family member 6
-2.0000
0.5690
63125
ENSG00000146857
STRA8
stimulated by retinoic acid 8
-2.0000
0.3529
63124
ENSG00000138495
COX17
cytochrome c oxidase copper chaperone COX17
-2.0000
0.5690
63123
ENSG00000124787
RPP40
ribonuclease P/MRP subunit p40
-2.0000
0.0000
63122
ENSG00000106993
CDC37L1
cell division cycle 37 like 1
-2.0000
0.1247
63121
ENSG00000081148
IMPG2
interphotoreceptor matrix proteoglycan 2
-2.0000
0.5690
63120
ENSG00000029993
HMGB3
high mobility group box 3
-2.0000
0.5690
63119
ENSG00000259138
novel transcript, antisense to NEK9 and TMED10
-1.9998
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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