SHOGoiN Cell Methylome: GSM2481643
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481643 Profile download | 7010000000000000000000-772 | Sequence Read Archive | SRP074598 | SRP074598_M116 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | 8-cell embryo | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000199601 | RNU6-562P | RNA, U6 small nuclear 562, pseudogene | 3.1699 | 0.0000 |
| 2 | ENSG00000229661 | BUD31P2 | BUD31 homolog pseudogene 2 | 3.1699 | 0.0000 |
| 3 | ENSG00000259457 | novel transcript | 3.0000 | 0.0001 | |
| 4 | ENSG00000280348 | TEC | 3.0000 | 0.0000 | |
| 5 | ENSG00000226847 | PRPS1P1 | phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 | 2.9908 | 0.0000 |
| 6 | ENSG00000250905 | novel transcript | 2.8497 | 0.0000 | |
| 7 | ENSG00000271963 | novel transcript, antisense to ZNF891 | 2.8333 | 0.0000 | |
| 8 | ENSG00000151418 | ATP6V1G3 | ATPase H+ transporting V1 subunit G3 | 2.8074 | 0.0004 |
| 9 | ENSG00000220091 | LAP3P1 | leucine aminopeptidase 3 pseudogene 1 | 2.8074 | 0.0004 |
| 10 | ENSG00000249284 | PC4 and SFRS1 interacting protein 1 (PSIP1) pseudogene | 2.8074 | 0.0004 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000269915 | novel transcript, antisense to EPS8L2 | -2.0463 | 0.0000 | |
| 63340 | ENSG00000250562 | RPL38P4 | ribosomal protein L38 pseudogene 4 | -2.0458 | 0.0097 |
| 63339 | ENSG00000248839 | novel transcript | -2.0458 | 0.0097 | |
| 63338 | ENSG00000154165 | GPR15 | G protein-coupled receptor 15 | -2.0458 | 0.0097 |
| 63337 | ENSG00000102805 | CLN5 | CLN5 intracellular trafficking protein | -2.0446 | 0.0000 |
| 63336 | ENSG00000138246 | DNAJC13 | DnaJ heat shock protein family (Hsp40) member C13 | -2.0446 | 0.0000 |
| 63335 | ENSG00000196227 | FAM217B | family with sequence similarity 217 member B | -2.0438 | 0.0000 |
| 63334 | ENSG00000223393 | novel transcript | -2.0437 | 0.0000 | |
| 63333 | ENSG00000169714 | CNBP | CCHC-type zinc finger nucleic acid binding protein | -2.0430 | 0.0000 |
| 63332 | ENSG00000281831 | HLA complex P5B | -2.0429 | 0.0000 |
