SHOGoiN Cell Methylome: GSM2481643

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481643


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M116Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199601 RNU6-562P RNA, U6 small nuclear 562, pseudogene 3.1699 0.0000
2 ENSG00000229661 BUD31P2 BUD31 homolog pseudogene 2 3.1699 0.0000
3 ENSG00000259457 novel transcript 3.0000 0.0001
4 ENSG00000280348 TEC 3.0000 0.0000
5 ENSG00000226847 PRPS1P1 phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 2.9908 0.0000
6 ENSG00000250905 novel transcript 2.8497 0.0000
7 ENSG00000271963 novel transcript, antisense to ZNF891 2.8333 0.0000
8 ENSG00000151418 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2.8074 0.0004
9 ENSG00000220091 LAP3P1 leucine aminopeptidase 3 pseudogene 1 2.8074 0.0004
10 ENSG00000249284 PC4 and SFRS1 interacting protein 1 (PSIP1) pseudogene 2.8074 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000269915 novel transcript, antisense to EPS8L2 -2.0463 0.0000
63340 ENSG00000250562 RPL38P4 ribosomal protein L38 pseudogene 4 -2.0458 0.0097
63339 ENSG00000248839 novel transcript -2.0458 0.0097
63338 ENSG00000154165 GPR15 G protein-coupled receptor 15 -2.0458 0.0097
63337 ENSG00000102805 CLN5 CLN5 intracellular trafficking protein -2.0446 0.0000
63336 ENSG00000138246 DNAJC13 DnaJ heat shock protein family (Hsp40) member C13 -2.0446 0.0000
63335 ENSG00000196227 FAM217B family with sequence similarity 217 member B -2.0438 0.0000
63334 ENSG00000223393 novel transcript -2.0437 0.0000
63333 ENSG00000169714 CNBP CCHC-type zinc finger nucleic acid binding protein -2.0430 0.0000
63332 ENSG00000281831 HLA complex P5B -2.0429 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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