Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481643

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481643 Profile download	7010000000000000000000-772	Sequence Read Archive	SRP074598	SRP074598_M116	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	8-cell embryo	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000199601	RNU6-562P	RNA, U6 small nuclear 562, pseudogene	3.1699	0.0000
2	ENSG00000229661	BUD31P2	BUD31 homolog pseudogene 2	3.1699	0.0000
3	ENSG00000259457		novel transcript	3.0000	0.0001
4	ENSG00000280348		TEC	3.0000	0.0000
5	ENSG00000226847	PRPS1P1	phosphoribosyl pyrophosphate synthetase 1 pseudogene 1	2.9908	0.0000
6	ENSG00000250905		novel transcript	2.8497	0.0000
7	ENSG00000271963		novel transcript, antisense to ZNF891	2.8333	0.0000
8	ENSG00000151418	ATP6V1G3	ATPase H+ transporting V1 subunit G3	2.8074	0.0004
9	ENSG00000220091	LAP3P1	leucine aminopeptidase 3 pseudogene 1	2.8074	0.0004
10	ENSG00000249284		PC4 and SFRS1 interacting protein 1 (PSIP1) pseudogene	2.8074	0.0004

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000171557	FGG	fibrinogen gamma chain	-2.0000	0.3529
63127	ENSG00000163216	SPRR2D	small proline rich protein 2D	-2.0000	0.5690
63126	ENSG00000162739	SLAMF6	SLAM family member 6	-2.0000	0.5690
63125	ENSG00000146857	STRA8	stimulated by retinoic acid 8	-2.0000	0.3529
63124	ENSG00000138495	COX17	cytochrome c oxidase copper chaperone COX17	-2.0000	0.5690
63123	ENSG00000124787	RPP40	ribonuclease P/MRP subunit p40	-2.0000	0.0000
63122	ENSG00000106993	CDC37L1	cell division cycle 37 like 1	-2.0000	0.1247
63121	ENSG00000081148	IMPG2	interphotoreceptor matrix proteoglycan 2	-2.0000	0.5690
63120	ENSG00000029993	HMGB3	high mobility group box 3	-2.0000	0.5690
63119	ENSG00000259138		novel transcript, antisense to NEK9 and TMED10	-1.9998	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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