Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481643

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481643


Profile download
7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M116Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199601 RNU6-562P RNA, U6 small nuclear 562, pseudogene 3.1699 0.0000
2 ENSG00000229661 BUD31P2 BUD31 homolog pseudogene 2 3.1699 0.0000
3 ENSG00000259457 novel transcript 3.0000 0.0001
4 ENSG00000280348 TEC 3.0000 0.0000
5 ENSG00000226847 PRPS1P1 phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 2.9908 0.0000
6 ENSG00000250905 novel transcript 2.8497 0.0000
7 ENSG00000271963 novel transcript, antisense to ZNF891 2.8333 0.0000
8 ENSG00000151418 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2.8074 0.0004
9 ENSG00000220091 LAP3P1 leucine aminopeptidase 3 pseudogene 1 2.8074 0.0004
10 ENSG00000249284 PC4 and SFRS1 interacting protein 1 (PSIP1) pseudogene 2.8074 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000171557 FGG fibrinogen gamma chain -2.0000 0.3529
63127 ENSG00000163216 SPRR2D small proline rich protein 2D -2.0000 0.5690
63126 ENSG00000162739 SLAMF6 SLAM family member 6 -2.0000 0.5690
63125 ENSG00000146857 STRA8 stimulated by retinoic acid 8 -2.0000 0.3529
63124 ENSG00000138495 COX17 cytochrome c oxidase copper chaperone COX17 -2.0000 0.5690
63123 ENSG00000124787 RPP40 ribonuclease P/MRP subunit p40 -2.0000 0.0000
63122 ENSG00000106993 CDC37L1 cell division cycle 37 like 1 -2.0000 0.1247
63121 ENSG00000081148 IMPG2 interphotoreceptor matrix proteoglycan 2 -2.0000 0.5690
63120 ENSG00000029993 HMGB3 high mobility group box 3 -2.0000 0.5690
63119 ENSG00000259138 novel transcript, antisense to NEK9 and TMED10 -1.9998 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...