SHOGoiN Cell Methylome: GSM2481644
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481644 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M117 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000159884 | CCDC107 | coiled-coil domain containing 107 | 6.8633 | 0.0000 |
| 2 | ENSG00000269900 | RMRP | RNA component of mitochondrial RNA processing endoribonuclease | 6.8633 | 0.0000 |
| 3 | ENSG00000277027 | RMRP | RNA component of mitochondrial RNA processing endoribonuclease | 6.8633 | 0.0000 |
| 4 | ENSG00000264940 | SNORD3C | small nucleolar RNA, C/D box 3C | 6.7197 | 0.0000 |
| 5 | ENSG00000129484 | PARP2 | poly(ADP-ribose) polymerase 2 | 6.4718 | 0.0000 |
| 6 | ENSG00000254846 | novel transcript | 6.4718 | 0.0000 | |
| 7 | ENSG00000259001 | ribonuclease P RNA component H1 | 6.4718 | 0.0000 | |
| 8 | ENSG00000277209 | RPPH1 | ribonuclease P RNA component H1 | 6.4718 | 0.0000 |
| 9 | ENSG00000252919 | NA | 5.9624 | 0.0000 | |
| 10 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 5.5533 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000265927 | novel transcript | -1.5850 | 0.0574 | |
| 63340 | ENSG00000265846 | MIR4276 | microRNA 4276 | -1.5850 | 0.0941 |
| 63339 | ENSG00000265810 | MIR3907 | microRNA 3907 | -1.5850 | 0.5392 |
| 63338 | ENSG00000265763 | ZNF488 | zinc finger protein 488 | -1.5850 | 0.0174 |
| 63337 | ENSG00000265566 | RN7SL605P | RNA, 7SL, cytoplasmic 605, pseudogene | -1.5850 | 0.0174 |
| 63336 | ENSG00000265511 | novel transcript | -1.5850 | 0.5392 | |
| 63335 | ENSG00000265480 | KRT18P55 | keratin 18 pseudogene 55 | -1.5850 | 0.0174 |
| 63334 | ENSG00000265479 | DTX2P1-UPK3BP1-PMS2P11 | DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene | -1.5850 | 0.0941 |
| 63333 | ENSG00000265425 | novel transcript | -1.5850 | 0.5392 | |
| 63332 | ENSG00000265380 | novel transcript | -1.5850 | 0.0941 |
