SHOGoiN Cell Methylome: GSM2481644

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481644


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M117Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000159884 CCDC107 coiled-coil domain containing 107 6.8633 0.0000
2 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 6.8633 0.0000
3 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease 6.8633 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 6.7197 0.0000
5 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 6.4718 0.0000
6 ENSG00000254846 novel transcript 6.4718 0.0000
7 ENSG00000259001 ribonuclease P RNA component H1 6.4718 0.0000
8 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.4718 0.0000
9 ENSG00000252919 NA 5.9624 0.0000
10 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 5.5533 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000265927 novel transcript -1.5850 0.0574
63340 ENSG00000265846 MIR4276 microRNA 4276 -1.5850 0.0941
63339 ENSG00000265810 MIR3907 microRNA 3907 -1.5850 0.5392
63338 ENSG00000265763 ZNF488 zinc finger protein 488 -1.5850 0.0174
63337 ENSG00000265566 RN7SL605P RNA, 7SL, cytoplasmic 605, pseudogene -1.5850 0.0174
63336 ENSG00000265511 novel transcript -1.5850 0.5392
63335 ENSG00000265480 KRT18P55 keratin 18 pseudogene 55 -1.5850 0.0174
63334 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene -1.5850 0.0941
63333 ENSG00000265425 novel transcript -1.5850 0.5392
63332 ENSG00000265380 novel transcript -1.5850 0.0941

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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