Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481644
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481644
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M117
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000159884
CCDC107
coiled-coil domain containing 107
6.8633
0.0000
2
ENSG00000269900
RMRP
RNA component of mitochondrial RNA processing endoribonuclease
6.8633
0.0000
3
ENSG00000277027
RMRP
RNA component of mitochondrial RNA processing endoribonuclease
6.8633
0.0000
4
ENSG00000264940
SNORD3C
small nucleolar RNA, C/D box 3C
6.7197
0.0000
5
ENSG00000129484
PARP2
poly(ADP-ribose) polymerase 2
6.4718
0.0000
6
ENSG00000254846
novel transcript
6.4718
0.0000
7
ENSG00000259001
ribonuclease P RNA component H1
6.4718
0.0000
8
ENSG00000277209
RPPH1
ribonuclease P RNA component H1
6.4718
0.0000
9
ENSG00000252919
Y RNA
5.9624
0.0000
10
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
5.5533
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000241305
ACTG1P13
actin gamma 1 pseudogene 13
-1.5850
0.5392
63127
ENSG00000241151
LINC02066
long intergenic non-protein coding RNA 2066
-1.5850
0.0941
63126
ENSG00000241032
RN7SL709P
RNA, 7SL, cytoplasmic 709, pseudogene
-1.5850
0.3040
63125
ENSG00000240888
novel transcript
-1.5850
0.5392
63124
ENSG00000240882
prostate tumor overexpressed 1 (PTOV1) pseudogene
-1.5850
0.0174
63123
ENSG00000240760
RPL31P56
ribosomal protein L31 pseudogene 56
-1.5850
0.5392
63122
ENSG00000240674
ribosomal protein L21 (RPL21) pseudogene
-1.5850
0.0058
63121
ENSG00000240578
TRBV22-1
T cell receptor beta variable 22-1 (pseudogene)
-1.5850
0.0174
63120
ENSG00000240480
RPL29P2
ribosomal protein L29 pseudogene 2
-1.5850
0.3040
63119
ENSG00000240474
RN7SL116P
RNA, 7SL, cytoplasmic 116, pseudogene
-1.5850
0.5392
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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