Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481644

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481644 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M117	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000159884	CCDC107	coiled-coil domain containing 107	6.8633	0.0000
2	ENSG00000269900	RMRP	RNA component of mitochondrial RNA processing endoribonuclease	6.8633	0.0000
3	ENSG00000277027	RMRP	RNA component of mitochondrial RNA processing endoribonuclease	6.8633	0.0000
4	ENSG00000264940	SNORD3C	small nucleolar RNA, C/D box 3C	6.7197	0.0000
5	ENSG00000129484	PARP2	poly(ADP-ribose) polymerase 2	6.4718	0.0000
6	ENSG00000254846		novel transcript	6.4718	0.0000
7	ENSG00000259001		ribonuclease P RNA component H1	6.4718	0.0000
8	ENSG00000277209	RPPH1	ribonuclease P RNA component H1	6.4718	0.0000
9	ENSG00000252919		Y RNA	5.9624	0.0000
10	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	5.5533	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000241305	ACTG1P13	actin gamma 1 pseudogene 13	-1.5850	0.5392
63127	ENSG00000241151	LINC02066	long intergenic non-protein coding RNA 2066	-1.5850	0.0941
63126	ENSG00000241032	RN7SL709P	RNA, 7SL, cytoplasmic 709, pseudogene	-1.5850	0.3040
63125	ENSG00000240888		novel transcript	-1.5850	0.5392
63124	ENSG00000240882		prostate tumor overexpressed 1 (PTOV1) pseudogene	-1.5850	0.0174
63123	ENSG00000240760	RPL31P56	ribosomal protein L31 pseudogene 56	-1.5850	0.5392
63122	ENSG00000240674		ribosomal protein L21 (RPL21) pseudogene	-1.5850	0.0058
63121	ENSG00000240578	TRBV22-1	T cell receptor beta variable 22-1 (pseudogene)	-1.5850	0.0174
63120	ENSG00000240480	RPL29P2	ribosomal protein L29 pseudogene 2	-1.5850	0.3040
63119	ENSG00000240474	RN7SL116P	RNA, 7SL, cytoplasmic 116, pseudogene	-1.5850	0.5392

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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