Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481644

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481644


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M117Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000159884 CCDC107 coiled-coil domain containing 107 6.8633 0.0000
2 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 6.8633 0.0000
3 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease 6.8633 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 6.7197 0.0000
5 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 6.4718 0.0000
6 ENSG00000254846 novel transcript 6.4718 0.0000
7 ENSG00000259001 ribonuclease P RNA component H1 6.4718 0.0000
8 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.4718 0.0000
9 ENSG00000252919 Y RNA 5.9624 0.0000
10 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 5.5533 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000241305 ACTG1P13 actin gamma 1 pseudogene 13 -1.5850 0.5392
63127 ENSG00000241151 LINC02066 long intergenic non-protein coding RNA 2066 -1.5850 0.0941
63126 ENSG00000241032 RN7SL709P RNA, 7SL, cytoplasmic 709, pseudogene -1.5850 0.3040
63125 ENSG00000240888 novel transcript -1.5850 0.5392
63124 ENSG00000240882 prostate tumor overexpressed 1 (PTOV1) pseudogene -1.5850 0.0174
63123 ENSG00000240760 RPL31P56 ribosomal protein L31 pseudogene 56 -1.5850 0.5392
63122 ENSG00000240674 ribosomal protein L21 (RPL21) pseudogene -1.5850 0.0058
63121 ENSG00000240578 TRBV22-1 T cell receptor beta variable 22-1 (pseudogene) -1.5850 0.0174
63120 ENSG00000240480 RPL29P2 ribosomal protein L29 pseudogene 2 -1.5850 0.3040
63119 ENSG00000240474 RN7SL116P RNA, 7SL, cytoplasmic 116, pseudogene -1.5850 0.5392

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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