SHOGoiN Cell Methylome: GSM2481645
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481645 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M118 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000254846 | novel transcript | 6.6157 | 0.0000 | |
| 2 | ENSG00000259001 | ribonuclease P RNA component H1 | 6.6157 | 0.0000 | |
| 3 | ENSG00000277209 | RPPH1 | ribonuclease P RNA component H1 | 6.6157 | 0.0000 |
| 4 | ENSG00000264940 | SNORD3C | small nucleolar RNA, C/D box 3C | 6.5004 | 0.0000 |
| 5 | ENSG00000252919 | NA | 6.3923 | 0.0000 | |
| 6 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 6.2808 | 0.0000 |
| 7 | ENSG00000282885 | novel transcript | 5.6784 | 0.0000 | |
| 8 | ENSG00000129484 | PARP2 | poly(ADP-ribose) polymerase 2 | 5.6736 | 0.0000 |
| 9 | ENSG00000159884 | CCDC107 | coiled-coil domain containing 107 | 4.8088 | 0.0000 |
| 10 | ENSG00000269900 | RMRP | RNA component of mitochondrial RNA processing endoribonuclease | 4.8088 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000253250 | C8orf88 | chromosome 8 open reading frame 88 | -1.5850 | 0.0016 |
| 63340 | ENSG00000253154 | novel transcript | -1.5850 | 0.5284 | |
| 63339 | ENSG00000252752 | RNU6-210P | RNA, U6 small nuclear 210, pseudogene | -1.5850 | 0.0892 |
| 63338 | ENSG00000252742 | NA | -1.5850 | 0.0016 | |
| 63337 | ENSG00000252716 | RN7SKP260 | RN7SK pseudogene 260 | -1.5850 | 0.0016 |
| 63336 | ENSG00000252642 | RNA5SP137 | RNA, 5S ribosomal pseudogene 137 | -1.5850 | 0.0000 |
| 63335 | ENSG00000252446 | RNU6-405P | RNA, U6 small nuclear 405, pseudogene | -1.5850 | 0.0000 |
| 63334 | ENSG00000252274 | NA | -1.5850 | 0.3048 | |
| 63333 | ENSG00000252258 | NA | -1.5850 | 0.3048 | |
| 63332 | ENSG00000252231 | RNA5SP67 | RNA, 5S ribosomal pseudogene 67 | -1.5850 | 0.5284 |
