Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481645

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481645


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M118Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254846 novel transcript 6.6157 0.0000
2 ENSG00000259001 ribonuclease P RNA component H1 6.6157 0.0000
3 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.6157 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 6.5004 0.0000
5 ENSG00000252919 Y RNA 6.3923 0.0000
6 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 6.2808 0.0000
7 ENSG00000282885 novel transcript 5.6784 0.0000
8 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 5.6736 0.0000
9 ENSG00000159884 CCDC107 coiled-coil domain containing 107 4.8088 0.0000
10 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 4.8088 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000225976 CKS1BP2 CDC28 protein kinase regulatory subunit 1B pseudogene 2 -1.5850 0.3048
63127 ENSG00000225933 RPS14P5 ribosomal protein S14 pseudogene 5 -1.5850 0.3048
63126 ENSG00000225750 novel transcript -1.5850 0.5284
63125 ENSG00000225720 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3 (APOBEC3) family pseudogene -1.5850 0.0278
63124 ENSG00000225672 CCNT2P1 cyclin T2 pseudogene 1 -1.5850 0.5284
63123 ENSG00000225522 novel pseudogene -1.5850 0.3048
63122 ENSG00000225323 HBAP1 hemoglobin subunit alpha pseudogene 1 -1.5850 0.0000
63121 ENSG00000225300 novel transcript -1.5850 0.5284
63120 ENSG00000225284 novel transcript -1.5850 0.0278
63119 ENSG00000225239 RPL21P107 ribosomal protein L21 pseudogene 107 -1.5850 0.0170

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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