Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481645

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481645 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M118	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000254846		novel transcript	6.6157	0.0000
2	ENSG00000259001		ribonuclease P RNA component H1	6.6157	0.0000
3	ENSG00000277209	RPPH1	ribonuclease P RNA component H1	6.6157	0.0000
4	ENSG00000264940	SNORD3C	small nucleolar RNA, C/D box 3C	6.5004	0.0000
5	ENSG00000252919		Y RNA	6.3923	0.0000
6	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	6.2808	0.0000
7	ENSG00000282885		novel transcript	5.6784	0.0000
8	ENSG00000129484	PARP2	poly(ADP-ribose) polymerase 2	5.6736	0.0000
9	ENSG00000159884	CCDC107	coiled-coil domain containing 107	4.8088	0.0000
10	ENSG00000269900	RMRP	RNA component of mitochondrial RNA processing endoribonuclease	4.8088	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000225976	CKS1BP2	CDC28 protein kinase regulatory subunit 1B pseudogene 2	-1.5850	0.3048
63127	ENSG00000225933	RPS14P5	ribosomal protein S14 pseudogene 5	-1.5850	0.3048
63126	ENSG00000225750		novel transcript	-1.5850	0.5284
63125	ENSG00000225720		apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3 (APOBEC3) family pseudogene	-1.5850	0.0278
63124	ENSG00000225672	CCNT2P1	cyclin T2 pseudogene 1	-1.5850	0.5284
63123	ENSG00000225522		novel pseudogene	-1.5850	0.3048
63122	ENSG00000225323	HBAP1	hemoglobin subunit alpha pseudogene 1	-1.5850	0.0000
63121	ENSG00000225300		novel transcript	-1.5850	0.5284
63120	ENSG00000225284		novel transcript	-1.5850	0.0278
63119	ENSG00000225239	RPL21P107	ribosomal protein L21 pseudogene 107	-1.5850	0.0170

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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