Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481645
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481645
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M118
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000254846
novel transcript
6.6157
0.0000
2
ENSG00000259001
ribonuclease P RNA component H1
6.6157
0.0000
3
ENSG00000277209
RPPH1
ribonuclease P RNA component H1
6.6157
0.0000
4
ENSG00000264940
SNORD3C
small nucleolar RNA, C/D box 3C
6.5004
0.0000
5
ENSG00000252919
Y RNA
6.3923
0.0000
6
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
6.2808
0.0000
7
ENSG00000282885
novel transcript
5.6784
0.0000
8
ENSG00000129484
PARP2
poly(ADP-ribose) polymerase 2
5.6736
0.0000
9
ENSG00000159884
CCDC107
coiled-coil domain containing 107
4.8088
0.0000
10
ENSG00000269900
RMRP
RNA component of mitochondrial RNA processing endoribonuclease
4.8088
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000225976
CKS1BP2
CDC28 protein kinase regulatory subunit 1B pseudogene 2
-1.5850
0.3048
63127
ENSG00000225933
RPS14P5
ribosomal protein S14 pseudogene 5
-1.5850
0.3048
63126
ENSG00000225750
novel transcript
-1.5850
0.5284
63125
ENSG00000225720
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3 (APOBEC3) family pseudogene
-1.5850
0.0278
63124
ENSG00000225672
CCNT2P1
cyclin T2 pseudogene 1
-1.5850
0.5284
63123
ENSG00000225522
novel pseudogene
-1.5850
0.3048
63122
ENSG00000225323
HBAP1
hemoglobin subunit alpha pseudogene 1
-1.5850
0.0000
63121
ENSG00000225300
novel transcript
-1.5850
0.5284
63120
ENSG00000225284
novel transcript
-1.5850
0.0278
63119
ENSG00000225239
RPL21P107
ribosomal protein L21 pseudogene 107
-1.5850
0.0170
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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