SHOGoiN Cell Methylome: GSM2481645

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481645


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M118Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254846 novel transcript 6.6157 0.0000
2 ENSG00000259001 ribonuclease P RNA component H1 6.6157 0.0000
3 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.6157 0.0000
4 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 6.5004 0.0000
5 ENSG00000252919 NA 6.3923 0.0000
6 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 6.2808 0.0000
7 ENSG00000282885 novel transcript 5.6784 0.0000
8 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 5.6736 0.0000
9 ENSG00000159884 CCDC107 coiled-coil domain containing 107 4.8088 0.0000
10 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 4.8088 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253250 C8orf88 chromosome 8 open reading frame 88 -1.5850 0.0016
63340 ENSG00000253154 novel transcript -1.5850 0.5284
63339 ENSG00000252752 RNU6-210P RNA, U6 small nuclear 210, pseudogene -1.5850 0.0892
63338 ENSG00000252742 NA -1.5850 0.0016
63337 ENSG00000252716 RN7SKP260 RN7SK pseudogene 260 -1.5850 0.0016
63336 ENSG00000252642 RNA5SP137 RNA, 5S ribosomal pseudogene 137 -1.5850 0.0000
63335 ENSG00000252446 RNU6-405P RNA, U6 small nuclear 405, pseudogene -1.5850 0.0000
63334 ENSG00000252274 NA -1.5850 0.3048
63333 ENSG00000252258 NA -1.5850 0.3048
63332 ENSG00000252231 RNA5SP67 RNA, 5S ribosomal pseudogene 67 -1.5850 0.5284

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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