Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481646

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481646


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M119Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 6.5870 0.0000
2 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 6.3894 0.0000
3 ENSG00000254846 novel transcript 6.3894 0.0000
4 ENSG00000259001 ribonuclease P RNA component H1 6.3894 0.0000
5 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.3894 0.0000
6 ENSG00000159884 CCDC107 coiled-coil domain containing 107 5.9559 0.0000
7 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 5.9559 0.0000
8 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease 5.9559 0.0000
9 ENSG00000252919 Y RNA 5.8680 0.0000
10 ENSG00000282885 novel transcript 5.3631 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000240131 ribosomal protein L39 (RPL39) pseudogene -1.5850 0.3045
63127 ENSG00000240047 RPS3AP32 RPS3A pseudogene 32 -1.5850 0.0170
63126 ENSG00000239911 PRKAG2-AS1 PRKAG2 antisense RNA 1 -1.5850 0.0016
63125 ENSG00000239810 PRAMEF11 PRAME family member 11 -1.5850 0.3045
63124 ENSG00000239736 CEACAMP3 CEA cell adhesion molecule pseudogene 3 -1.5850 0.5295
63123 ENSG00000239716 novel transcript -1.5850 0.0895
63122 ENSG00000239525 RPL30P5 ribosomal protein L30 pseudogene 5 -1.5850 0.0282
63121 ENSG00000239256 RPL35AP35 ribosomal protein L35a pseudogene 35 -1.5850 0.0016
63120 ENSG00000239080 NA -1.5850 0.0282
63119 ENSG00000238632 RNU7-126P RNA, U7 small nuclear 126 pseudogene -1.5850 0.0170

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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