SHOGoiN Cell Methylome: GSM2481646

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481646


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M119Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 6.5870 0.0000
2 ENSG00000129484 PARP2 poly(ADP-ribose) polymerase 2 6.3894 0.0000
3 ENSG00000254846 novel transcript 6.3894 0.0000
4 ENSG00000259001 ribonuclease P RNA component H1 6.3894 0.0000
5 ENSG00000277209 RPPH1 ribonuclease P RNA component H1 6.3894 0.0000
6 ENSG00000159884 CCDC107 coiled-coil domain containing 107 5.9559 0.0000
7 ENSG00000269900 RMRP RNA component of mitochondrial RNA processing endoribonuclease 5.9559 0.0000
8 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease 5.9559 0.0000
9 ENSG00000252919 NA 5.8680 0.0000
10 ENSG00000282885 novel transcript 5.3631 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000260602 HMGN2P40 high mobility group nucleosomal binding domain 2 pseudogene 40 -1.5850 0.3045
63340 ENSG00000260518 BMS1P8 BMS1 pseudogene 8 -1.5850 0.0050
63339 ENSG00000260382 transmembrane protein 183A (TMEM183A) pseudogene -1.5850 0.5295
63338 ENSG00000260379 ribosomal protein S14 (RPS14) pseudogene -1.5850 0.3045
63337 ENSG00000260368 novel transcript, overlapping YWHAZ -1.5850 0.0050
63336 ENSG00000260256 novel transcript -1.5850 0.0282
63335 ENSG00000260206 novel transcript, antisense to IMP3 -1.5850 0.0016
63334 ENSG00000260186 LINC02137 long intergenic non-protein coding RNA 2137 -1.5850 0.0895
63333 ENSG00000260166 novel transcript -1.5850 0.0282
63332 ENSG00000260092 TMEM231-CHST5 readthrough protein -1.5850 0.0282

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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