SHOGoiN Cell Methylome: GSM2481646
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481646 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M119 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 6.5870 | 0.0000 |
| 2 | ENSG00000129484 | PARP2 | poly(ADP-ribose) polymerase 2 | 6.3894 | 0.0000 |
| 3 | ENSG00000254846 | novel transcript | 6.3894 | 0.0000 | |
| 4 | ENSG00000259001 | ribonuclease P RNA component H1 | 6.3894 | 0.0000 | |
| 5 | ENSG00000277209 | RPPH1 | ribonuclease P RNA component H1 | 6.3894 | 0.0000 |
| 6 | ENSG00000159884 | CCDC107 | coiled-coil domain containing 107 | 5.9559 | 0.0000 |
| 7 | ENSG00000269900 | RMRP | RNA component of mitochondrial RNA processing endoribonuclease | 5.9559 | 0.0000 |
| 8 | ENSG00000277027 | RMRP | RNA component of mitochondrial RNA processing endoribonuclease | 5.9559 | 0.0000 |
| 9 | ENSG00000252919 | NA | 5.8680 | 0.0000 | |
| 10 | ENSG00000282885 | novel transcript | 5.3631 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000260602 | HMGN2P40 | high mobility group nucleosomal binding domain 2 pseudogene 40 | -1.5850 | 0.3045 |
| 63340 | ENSG00000260518 | BMS1P8 | BMS1 pseudogene 8 | -1.5850 | 0.0050 |
| 63339 | ENSG00000260382 | transmembrane protein 183A (TMEM183A) pseudogene | -1.5850 | 0.5295 | |
| 63338 | ENSG00000260379 | ribosomal protein S14 (RPS14) pseudogene | -1.5850 | 0.3045 | |
| 63337 | ENSG00000260368 | novel transcript, overlapping YWHAZ | -1.5850 | 0.0050 | |
| 63336 | ENSG00000260256 | novel transcript | -1.5850 | 0.0282 | |
| 63335 | ENSG00000260206 | novel transcript, antisense to IMP3 | -1.5850 | 0.0016 | |
| 63334 | ENSG00000260186 | LINC02137 | long intergenic non-protein coding RNA 2137 | -1.5850 | 0.0895 |
| 63333 | ENSG00000260166 | novel transcript | -1.5850 | 0.0282 | |
| 63332 | ENSG00000260092 | TMEM231-CHST5 readthrough protein | -1.5850 | 0.0282 |
