Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481646

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481646 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M119	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	6.5870	0.0000
2	ENSG00000129484	PARP2	poly(ADP-ribose) polymerase 2	6.3894	0.0000
3	ENSG00000254846		novel transcript	6.3894	0.0000
4	ENSG00000259001		ribonuclease P RNA component H1	6.3894	0.0000
5	ENSG00000277209	RPPH1	ribonuclease P RNA component H1	6.3894	0.0000
6	ENSG00000159884	CCDC107	coiled-coil domain containing 107	5.9559	0.0000
7	ENSG00000269900	RMRP	RNA component of mitochondrial RNA processing endoribonuclease	5.9559	0.0000
8	ENSG00000277027	RMRP	RNA component of mitochondrial RNA processing endoribonuclease	5.9559	0.0000
9	ENSG00000252919		Y RNA	5.8680	0.0000
10	ENSG00000282885		novel transcript	5.3631	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000240131		ribosomal protein L39 (RPL39) pseudogene	-1.5850	0.3045
63127	ENSG00000240047	RPS3AP32	RPS3A pseudogene 32	-1.5850	0.0170
63126	ENSG00000239911	PRKAG2-AS1	PRKAG2 antisense RNA 1	-1.5850	0.0016
63125	ENSG00000239810	PRAMEF11	PRAME family member 11	-1.5850	0.3045
63124	ENSG00000239736	CEACAMP3	CEA cell adhesion molecule pseudogene 3	-1.5850	0.5295
63123	ENSG00000239716		novel transcript	-1.5850	0.0895
63122	ENSG00000239525	RPL30P5	ribosomal protein L30 pseudogene 5	-1.5850	0.0282
63121	ENSG00000239256	RPL35AP35	ribosomal protein L35a pseudogene 35	-1.5850	0.0016
63120	ENSG00000239080		NA	-1.5850	0.0282
63119	ENSG00000238632	RNU7-126P	RNA, U7 small nuclear 126 pseudogene	-1.5850	0.0170

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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