Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481646
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481646
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M119
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
6.5870
0.0000
2
ENSG00000129484
PARP2
poly(ADP-ribose) polymerase 2
6.3894
0.0000
3
ENSG00000254846
novel transcript
6.3894
0.0000
4
ENSG00000259001
ribonuclease P RNA component H1
6.3894
0.0000
5
ENSG00000277209
RPPH1
ribonuclease P RNA component H1
6.3894
0.0000
6
ENSG00000159884
CCDC107
coiled-coil domain containing 107
5.9559
0.0000
7
ENSG00000269900
RMRP
RNA component of mitochondrial RNA processing endoribonuclease
5.9559
0.0000
8
ENSG00000277027
RMRP
RNA component of mitochondrial RNA processing endoribonuclease
5.9559
0.0000
9
ENSG00000252919
Y RNA
5.8680
0.0000
10
ENSG00000282885
novel transcript
5.3631
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000240131
ribosomal protein L39 (RPL39) pseudogene
-1.5850
0.3045
63127
ENSG00000240047
RPS3AP32
RPS3A pseudogene 32
-1.5850
0.0170
63126
ENSG00000239911
PRKAG2-AS1
PRKAG2 antisense RNA 1
-1.5850
0.0016
63125
ENSG00000239810
PRAMEF11
PRAME family member 11
-1.5850
0.3045
63124
ENSG00000239736
CEACAMP3
CEA cell adhesion molecule pseudogene 3
-1.5850
0.5295
63123
ENSG00000239716
novel transcript
-1.5850
0.0895
63122
ENSG00000239525
RPL30P5
ribosomal protein L30 pseudogene 5
-1.5850
0.0282
63121
ENSG00000239256
RPL35AP35
ribosomal protein L35a pseudogene 35
-1.5850
0.0016
63120
ENSG00000239080
NA
-1.5850
0.0282
63119
ENSG00000238632
RNU7-126P
RNA, U7 small nuclear 126 pseudogene
-1.5850
0.0170
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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