Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481647

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481647


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M120Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000115138 POMC proopiomelanocortin 2.3219 0.0005
2 ENSG00000167799 NUDT8 nudix hydrolase 8 2.3219 0.0000
3 ENSG00000199964 Y RNA 2.3219 0.0005
4 ENSG00000238705 MIR1976 microRNA 1976 2.0844 0.0000
5 ENSG00000165121 kinesin family member 27 (KIF27) pseudogene 2.0000 0.0000
6 ENSG00000176555 OR4S1 olfactory receptor family 4 subfamily S member 1 2.0000 0.0031
7 ENSG00000186377 CYP4X1 cytochrome P450 family 4 subfamily X member 1 2.0000 0.0031
8 ENSG00000205329 OR6C3 olfactory receptor family 6 subfamily C member 3 2.0000 0.0000
9 ENSG00000207717 MIR551B microRNA 551b 2.0000 0.0000
10 ENSG00000212589 NA 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234781 LINC01103 long intergenic non-protein coding RNA 1103 -1.5850 1.0000
63127 ENSG00000234735 ribosomal protein S25 (RPS25) pseudogene -1.5850 1.0000
63126 ENSG00000234682 VDAC2P4 VDAC2 pseudogene 4 -1.5850 1.0000
63125 ENSG00000234639 protein phosphatase 2, regulatory subunit B', gamma isoform (PPP2R5C) pseudogene -1.5850 0.1518
63124 ENSG00000234629 WDR82P1 WD repeat domain 82 pseudogene 1 -1.5850 0.1027
63123 ENSG00000234569 RAD1P1 RAD1 pseudogene 1 -1.5850 0.6129
63122 ENSG00000233969 novel transcript -1.5850 1.0000
63121 ENSG00000233827 CCNQP1 CCNQ pseudogene 1 -1.5850 0.6129
63120 ENSG00000233792 PUDPP2 pseudouridine 5'-phosphatase pseudogene 2 -1.5850 0.3758
63119 ENSG00000233681 CEACAMP1 CEA cell adhesion molecule pseudogene 1 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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