SHOGoiN Cell Methylome: GSM2481647
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481647 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M120 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000115138 | POMC | proopiomelanocortin | 2.3219 | 0.0005 |
| 2 | ENSG00000167799 | NUDT8 | nudix hydrolase 8 | 2.3219 | 0.0000 |
| 3 | ENSG00000199964 | NA | 2.3219 | 0.0005 | |
| 4 | ENSG00000238705 | MIR1976 | microRNA 1976 | 2.0844 | 0.0000 |
| 5 | ENSG00000165121 | kinesin family member 27 (KIF27) pseudogene | 2.0000 | 0.0000 | |
| 6 | ENSG00000176555 | OR4S1 | olfactory receptor family 4 subfamily S member 1 | 2.0000 | 0.0031 |
| 7 | ENSG00000186377 | CYP4X1 | cytochrome P450 family 4 subfamily X member 1 | 2.0000 | 0.0031 |
| 8 | ENSG00000205329 | OR6C3 | olfactory receptor family 6 subfamily C member 3 | 2.0000 | 0.0000 |
| 9 | ENSG00000207717 | MIR551B | microRNA 551b | 2.0000 | 0.0000 |
| 10 | ENSG00000212589 | NA | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000259507 | zinc finger CCHC domain-containing protein 9 (ZCCHC9) pseudogene | -1.5850 | 1.0000 | |
| 63340 | ENSG00000259333 | intercellular adhesion molecule (ICAM) pseudogene | -1.5850 | 1.0000 | |
| 63339 | ENSG00000259215 | novel transcript | -1.5850 | 0.0029 | |
| 63338 | ENSG00000259194 | novel transcript, intronic to GLDN | -1.5850 | 0.6129 | |
| 63337 | ENSG00000259118 | novel transcript, antisense to MAX | -1.5850 | 1.0000 | |
| 63336 | ENSG00000259104 | PTCSC3 | papillary thyroid carcinoma susceptibility candidate 3 | -1.5850 | 1.0000 |
| 63335 | ENSG00000259005 | novel transcript | -1.5850 | 0.6022 | |
| 63334 | ENSG00000258854 | novel transcript, antisense to GNG2 and C14orf166 | -1.5850 | 1.0000 | |
| 63333 | ENSG00000258744 | novel transcript, antisense to CMA1 | -1.5850 | 0.6022 | |
| 63332 | ENSG00000258722 | CKAP2P1 | cytoskeleton associated protein 2 pseudogene 1 | -1.5850 | 1.0000 |
