Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481647

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481647 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M120	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000115138	POMC	proopiomelanocortin	2.3219	0.0005
2	ENSG00000167799	NUDT8	nudix hydrolase 8	2.3219	0.0000
3	ENSG00000199964		Y RNA	2.3219	0.0005
4	ENSG00000238705	MIR1976	microRNA 1976	2.0844	0.0000
5	ENSG00000165121		kinesin family member 27 (KIF27) pseudogene	2.0000	0.0000
6	ENSG00000176555	OR4S1	olfactory receptor family 4 subfamily S member 1	2.0000	0.0031
7	ENSG00000186377	CYP4X1	cytochrome P450 family 4 subfamily X member 1	2.0000	0.0031
8	ENSG00000205329	OR6C3	olfactory receptor family 6 subfamily C member 3	2.0000	0.0000
9	ENSG00000207717	MIR551B	microRNA 551b	2.0000	0.0000
10	ENSG00000212589		NA	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000234781	LINC01103	long intergenic non-protein coding RNA 1103	-1.5850	1.0000
63127	ENSG00000234735		ribosomal protein S25 (RPS25) pseudogene	-1.5850	1.0000
63126	ENSG00000234682	VDAC2P4	VDAC2 pseudogene 4	-1.5850	1.0000
63125	ENSG00000234639		protein phosphatase 2, regulatory subunit B', gamma isoform (PPP2R5C) pseudogene	-1.5850	0.1518
63124	ENSG00000234629	WDR82P1	WD repeat domain 82 pseudogene 1	-1.5850	0.1027
63123	ENSG00000234569	RAD1P1	RAD1 pseudogene 1	-1.5850	0.6129
63122	ENSG00000233969		novel transcript	-1.5850	1.0000
63121	ENSG00000233827	CCNQP1	CCNQ pseudogene 1	-1.5850	0.6129
63120	ENSG00000233792	PUDPP2	pseudouridine 5'-phosphatase pseudogene 2	-1.5850	0.3758
63119	ENSG00000233681	CEACAMP1	CEA cell adhesion molecule pseudogene 1	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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