Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481647
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481647
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M120
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000115138
POMC
proopiomelanocortin
2.3219
0.0005
2
ENSG00000167799
NUDT8
nudix hydrolase 8
2.3219
0.0000
3
ENSG00000199964
Y RNA
2.3219
0.0005
4
ENSG00000238705
MIR1976
microRNA 1976
2.0844
0.0000
5
ENSG00000165121
kinesin family member 27 (KIF27) pseudogene
2.0000
0.0000
6
ENSG00000176555
OR4S1
olfactory receptor family 4 subfamily S member 1
2.0000
0.0031
7
ENSG00000186377
CYP4X1
cytochrome P450 family 4 subfamily X member 1
2.0000
0.0031
8
ENSG00000205329
OR6C3
olfactory receptor family 6 subfamily C member 3
2.0000
0.0000
9
ENSG00000207717
MIR551B
microRNA 551b
2.0000
0.0000
10
ENSG00000212589
NA
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000234781
LINC01103
long intergenic non-protein coding RNA 1103
-1.5850
1.0000
63127
ENSG00000234735
ribosomal protein S25 (RPS25) pseudogene
-1.5850
1.0000
63126
ENSG00000234682
VDAC2P4
VDAC2 pseudogene 4
-1.5850
1.0000
63125
ENSG00000234639
protein phosphatase 2, regulatory subunit B', gamma isoform (PPP2R5C) pseudogene
-1.5850
0.1518
63124
ENSG00000234629
WDR82P1
WD repeat domain 82 pseudogene 1
-1.5850
0.1027
63123
ENSG00000234569
RAD1P1
RAD1 pseudogene 1
-1.5850
0.6129
63122
ENSG00000233969
novel transcript
-1.5850
1.0000
63121
ENSG00000233827
CCNQP1
CCNQ pseudogene 1
-1.5850
0.6129
63120
ENSG00000233792
PUDPP2
pseudouridine 5'-phosphatase pseudogene 2
-1.5850
0.3758
63119
ENSG00000233681
CEACAMP1
CEA cell adhesion molecule pseudogene 1
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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