Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481648

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481648


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M121Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204257 HLA-DMA major histocompatibility complex, class II, DM alpha 2.5850 0.0001
2 ENSG00000223837 novel transcript 2.5850 0.0001
3 ENSG00000113328 CCNG1 cyclin G1 2.3219 0.0005
4 ENSG00000166111 SVOP SV2 related protein 2.3219 0.0005
5 ENSG00000222414 RNU2-59P RNA, U2 small nuclear 59, pseudogene 2.3219 0.0005
7 ENSG00000259632 UTP6, small subunit (SSU) processome component, homolog (yeast) (UTP6) pseudogene 2.3219 0.0000
8 ENSG00000277677 Metazoan signal recognition particle RNA 2.3219 0.0000
9 ENSG00000232591 LINC02642 long intergenic non-protein coding RNA 2642 2.1610 0.0000
10 ENSG00000009844 VTA1 vesicle trafficking 1 2.0000 0.0000
63119 ENSG00000249490 LINC02146 long intergenic non-protein coding RNA 2146 -1.5850 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000250238 pseudogene similar to part of WEE1 homolog (WEE1) -1.5850 0.6158
63126 ENSG00000249950 ribosomal protein S3a pseudogene -1.5850 0.0161
63125 ENSG00000249856 novel transcript -1.5850 1.0000
63124 ENSG00000249846 LINC02021 long intergenic non-protein coding RNA 2021 -1.5850 0.0001
63123 ENSG00000249829 ubiquinol-cytochrome c reductase hinge protein (UQCRH ) pseudogene -1.5850 1.0000
63122 ENSG00000249662 LINC02218 long intergenic non-protein coding RNA 2218 -1.5850 1.0000
63121 ENSG00000249658 novel transcript -1.5850 1.0000
63120 ENSG00000249610 ZNF474-AS1 ZNF474 antisense RNA 1 -1.5850 1.0000
63119 ENSG00000249490 LINC02146 long intergenic non-protein coding RNA 2146 -1.5850 1.0000
10 ENSG00000009844 VTA1 vesicle trafficking 1 2.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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