SHOGoiN Cell Methylome: GSM2481648

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481648


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M121Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204257 HLA-DMA major histocompatibility complex, class II, DM alpha 2.5850 0.0001
2 ENSG00000223837 novel transcript 2.5850 0.0001
3 ENSG00000113328 CCNG1 cyclin G1 2.3219 0.0005
4 ENSG00000166111 SVOP SV2 related protein 2.3219 0.0005
5 ENSG00000222414 RNU2-59P RNA, U2 small nuclear 59, pseudogene 2.3219 0.0005
7 ENSG00000259632 UTP6, small subunit (SSU) processome component, homolog (yeast) (UTP6) pseudogene 2.3219 0.0000
8 ENSG00000277677 NA 2.3219 0.0000
9 ENSG00000232591 LINC02642 long intergenic non-protein coding RNA 2642 2.1610 0.0000
10 ENSG00000009844 VTA1 vesicle trafficking 1 2.0000 0.0000
63332 ENSG00000267219 novel transcript, antisense to KIAA0355 -1.5850 0.6004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000267708 RDM1P3 RDM1 pseudogene 3 -1.5850 0.6158
63340 ENSG00000267690 LDLRAD4-AS1 LDLRAD4 antisense RNA 1 -1.5850 1.0000
63339 ENSG00000267663 PPIAP56 peptidylprolyl isomerase A pseudogene 56 -1.5850 0.2501
63338 ENSG00000267423 novel transcript -1.5850 1.0000
63337 ENSG00000267404 WD repeat domain phosphoinositide-interacting protein 3, pseudogene -1.5850 1.0000
63336 ENSG00000267325 LINC01415 long intergenic non-protein coding RNA 1415 -1.5850 0.6158
63335 ENSG00000267289 novel transcript -1.5850 1.0000
63334 ENSG00000267243 novel transcript -1.5850 1.0000
63333 ENSG00000267227 NIMA (never in mitosis gene a)-related kinase 4 (NEK4) pseudogene -1.5850 1.0000
63332 ENSG00000267219 novel transcript, antisense to KIAA0355 -1.5850 0.6004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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