Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481649

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481649 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M122	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000196352	CD55	CD55 molecule (Cromer blood group)	2.3219	0.0007
2	ENSG00000251234	PSMA2P2	proteasome subunit alpha 2 pseudogene 2	2.3219	0.0000
3	ENSG00000107021	TBC1D13	TBC1 domain family member 13	2.0000	0.0044
4	ENSG00000111877	MCM9	minichromosome maintenance 9 homologous recombination repair factor	2.0000	0.0000
5	ENSG00000125352	RNF113A	ring finger protein 113A	2.0000	0.0044
6	ENSG00000125356	NDUFA1	NADH:ubiquinone oxidoreductase subunit A1	2.0000	0.0044
7	ENSG00000183696	UPP1	uridine phosphorylase 1	2.0000	0.0044
8	ENSG00000197128	ZNF772	zinc finger protein 772	2.0000	0.0044
9	ENSG00000199577	RNU6-822P	RNA, U6 small nuclear 822, pseudogene	2.0000	0.0044
10	ENSG00000201221	RNU4-40P	RNA, U4 small nuclear 40, pseudogene	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000217576		novel transcript	-1.5850	1.0000
63127	ENSG00000217557		ribosomal protein L34 (RPL34) pseudogene	-1.5850	1.0000
63126	ENSG00000217488		LSM14A, SCD6 homolog A (S. cerevisiae) (LSM14A) pseudogene	-1.5850	1.0000
63125	ENSG00000217239		ribosomal protein L34 (RPL34) pseudogene	-1.5850	0.3836
63124	ENSG00000216977	RPL21P65	ribosomal protein L21 pseudogene 65	-1.5850	1.0000
63123	ENSG00000215914	MMP23A	matrix metallopeptidase 23A (pseudogene)	-1.5850	0.0000
63122	ENSG00000215601	TSPY24P	testis specific protein Y-linked 24, pseudogene	-1.5850	0.0922
63121	ENSG00000214891	TRIM64C	tripartite motif containing 64C	-1.5850	0.0017
63120	ENSG00000214415	GNAT3	G protein subunit alpha transducin 3	-1.5850	1.0000
63119	ENSG00000214330	ABCD1P5	ATP binding cassette subfamily D member 1 pseudogene 5	-1.5850	0.3688

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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