Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
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SHOGoiN Cell Methylome: GSM2481649
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481649
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M122
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000196352
CD55
CD55 molecule (Cromer blood group)
2.3219
0.0007
2
ENSG00000251234
PSMA2P2
proteasome subunit alpha 2 pseudogene 2
2.3219
0.0000
3
ENSG00000107021
TBC1D13
TBC1 domain family member 13
2.0000
0.0044
4
ENSG00000111877
MCM9
minichromosome maintenance 9 homologous recombination repair factor
2.0000
0.0000
5
ENSG00000125352
RNF113A
ring finger protein 113A
2.0000
0.0044
6
ENSG00000125356
NDUFA1
NADH:ubiquinone oxidoreductase subunit A1
2.0000
0.0044
7
ENSG00000183696
UPP1
uridine phosphorylase 1
2.0000
0.0044
8
ENSG00000197128
ZNF772
zinc finger protein 772
2.0000
0.0044
9
ENSG00000199577
RNU6-822P
RNA, U6 small nuclear 822, pseudogene
2.0000
0.0044
10
ENSG00000201221
RNU4-40P
RNA, U4 small nuclear 40, pseudogene
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000217576
novel transcript
-1.5850
1.0000
63127
ENSG00000217557
ribosomal protein L34 (RPL34) pseudogene
-1.5850
1.0000
63126
ENSG00000217488
LSM14A, SCD6 homolog A (S. cerevisiae) (LSM14A) pseudogene
-1.5850
1.0000
63125
ENSG00000217239
ribosomal protein L34 (RPL34) pseudogene
-1.5850
0.3836
63124
ENSG00000216977
RPL21P65
ribosomal protein L21 pseudogene 65
-1.5850
1.0000
63123
ENSG00000215914
MMP23A
matrix metallopeptidase 23A (pseudogene)
-1.5850
0.0000
63122
ENSG00000215601
TSPY24P
testis specific protein Y-linked 24, pseudogene
-1.5850
0.0922
63121
ENSG00000214891
TRIM64C
tripartite motif containing 64C
-1.5850
0.0017
63120
ENSG00000214415
GNAT3
G protein subunit alpha transducin 3
-1.5850
1.0000
63119
ENSG00000214330
ABCD1P5
ATP binding cassette subfamily D member 1 pseudogene 5
-1.5850
0.3688
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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