SHOGoiN Cell Methylome: GSM2481649
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481649 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M122 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000196352 | CD55 | CD55 molecule (Cromer blood group) | 2.3219 | 0.0007 |
| 2 | ENSG00000251234 | PSMA2P2 | proteasome subunit alpha 2 pseudogene 2 | 2.3219 | 0.0000 |
| 3 | ENSG00000107021 | TBC1D13 | TBC1 domain family member 13 | 2.0000 | 0.0044 |
| 4 | ENSG00000111877 | MCM9 | minichromosome maintenance 9 homologous recombination repair factor | 2.0000 | 0.0000 |
| 5 | ENSG00000125352 | RNF113A | ring finger protein 113A | 2.0000 | 0.0044 |
| 6 | ENSG00000125356 | NDUFA1 | NADH:ubiquinone oxidoreductase subunit A1 | 2.0000 | 0.0044 |
| 7 | ENSG00000183696 | UPP1 | uridine phosphorylase 1 | 2.0000 | 0.0044 |
| 8 | ENSG00000197128 | ZNF772 | zinc finger protein 772 | 2.0000 | 0.0044 |
| 9 | ENSG00000199577 | RNU6-822P | RNA, U6 small nuclear 822, pseudogene | 2.0000 | 0.0044 |
| 10 | ENSG00000201221 | RNU4-40P | RNA, U4 small nuclear 40, pseudogene | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000240535 | novel transcript, antisense to GZMK | -1.5850 | 0.5982 | |
| 63340 | ENSG00000240533 | RN7SL69P | RNA, 7SL, cytoplasmic 69, pseudogene | -1.5850 | 1.0000 |
| 63339 | ENSG00000240440 | novel transcript | -1.5850 | 1.0000 | |
| 63338 | ENSG00000240125 | RPL23AP75 | ribosomal protein L23a pseudogene 75 | -1.5850 | 0.3836 |
| 63337 | ENSG00000240003 | RPL7P24 | ribosomal protein L7 pseudogene 24 | -1.5850 | 0.3836 |
| 63336 | ENSG00000239994 | novel transcript | -1.5850 | 0.5982 | |
| 63335 | ENSG00000239978 | OR7E53P | olfactory receptor family 7 subfamily E member 53 pseudogene | -1.5850 | 1.0000 |
| 63334 | ENSG00000239961 | LILRA4 | leukocyte immunoglobulin like receptor A4 | -1.5850 | 0.1465 |
| 63333 | ENSG00000239825 | RN7SL549P | RNA, 7SL, cytoplasmic 549, pseudogene | -1.5850 | 0.2358 |
| 63332 | ENSG00000239694 | RPSAP38 | ribosomal protein SA pseudogene 38 | -1.5850 | 1.0000 |
