Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481649

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481649


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M122Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000196352 CD55 CD55 molecule (Cromer blood group) 2.3219 0.0007
2 ENSG00000251234 PSMA2P2 proteasome subunit alpha 2 pseudogene 2 2.3219 0.0000
3 ENSG00000107021 TBC1D13 TBC1 domain family member 13 2.0000 0.0044
4 ENSG00000111877 MCM9 minichromosome maintenance 9 homologous recombination repair factor 2.0000 0.0000
5 ENSG00000125352 RNF113A ring finger protein 113A 2.0000 0.0044
6 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.0000 0.0044
7 ENSG00000183696 UPP1 uridine phosphorylase 1 2.0000 0.0044
8 ENSG00000197128 ZNF772 zinc finger protein 772 2.0000 0.0044
9 ENSG00000199577 RNU6-822P RNA, U6 small nuclear 822, pseudogene 2.0000 0.0044
10 ENSG00000201221 RNU4-40P RNA, U4 small nuclear 40, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000217576 novel transcript -1.5850 1.0000
63127 ENSG00000217557 ribosomal protein L34 (RPL34) pseudogene -1.5850 1.0000
63126 ENSG00000217488 LSM14A, SCD6 homolog A (S. cerevisiae) (LSM14A) pseudogene -1.5850 1.0000
63125 ENSG00000217239 ribosomal protein L34 (RPL34) pseudogene -1.5850 0.3836
63124 ENSG00000216977 RPL21P65 ribosomal protein L21 pseudogene 65 -1.5850 1.0000
63123 ENSG00000215914 MMP23A matrix metallopeptidase 23A (pseudogene) -1.5850 0.0000
63122 ENSG00000215601 TSPY24P testis specific protein Y-linked 24, pseudogene -1.5850 0.0922
63121 ENSG00000214891 TRIM64C tripartite motif containing 64C -1.5850 0.0017
63120 ENSG00000214415 GNAT3 G protein subunit alpha transducin 3 -1.5850 1.0000
63119 ENSG00000214330 ABCD1P5 ATP binding cassette subfamily D member 1 pseudogene 5 -1.5850 0.3688

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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