SHOGoiN Cell Methylome: GSM2481649

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481649


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M122Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000196352 CD55 CD55 molecule (Cromer blood group) 2.3219 0.0007
2 ENSG00000251234 PSMA2P2 proteasome subunit alpha 2 pseudogene 2 2.3219 0.0000
3 ENSG00000107021 TBC1D13 TBC1 domain family member 13 2.0000 0.0044
4 ENSG00000111877 MCM9 minichromosome maintenance 9 homologous recombination repair factor 2.0000 0.0000
5 ENSG00000125352 RNF113A ring finger protein 113A 2.0000 0.0044
6 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.0000 0.0044
7 ENSG00000183696 UPP1 uridine phosphorylase 1 2.0000 0.0044
8 ENSG00000197128 ZNF772 zinc finger protein 772 2.0000 0.0044
9 ENSG00000199577 RNU6-822P RNA, U6 small nuclear 822, pseudogene 2.0000 0.0044
10 ENSG00000201221 RNU4-40P RNA, U4 small nuclear 40, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000240535 novel transcript, antisense to GZMK -1.5850 0.5982
63340 ENSG00000240533 RN7SL69P RNA, 7SL, cytoplasmic 69, pseudogene -1.5850 1.0000
63339 ENSG00000240440 novel transcript -1.5850 1.0000
63338 ENSG00000240125 RPL23AP75 ribosomal protein L23a pseudogene 75 -1.5850 0.3836
63337 ENSG00000240003 RPL7P24 ribosomal protein L7 pseudogene 24 -1.5850 0.3836
63336 ENSG00000239994 novel transcript -1.5850 0.5982
63335 ENSG00000239978 OR7E53P olfactory receptor family 7 subfamily E member 53 pseudogene -1.5850 1.0000
63334 ENSG00000239961 LILRA4 leukocyte immunoglobulin like receptor A4 -1.5850 0.1465
63333 ENSG00000239825 RN7SL549P RNA, 7SL, cytoplasmic 549, pseudogene -1.5850 0.2358
63332 ENSG00000239694 RPSAP38 ribosomal protein SA pseudogene 38 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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