Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481650
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481650
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M123
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000230202
ribosomal protein L29 (RPL29) pseudogene
4.1722
0.0000
2
ENSG00000224858
RPL29P11
ribosomal protein L29 pseudogene 11
3.9973
0.0000
3
ENSG00000250068
vacuolar protein sorting 33B (VPS33B) pseudogene
2.5850
0.0001
4
ENSG00000213997
PGAM1P7
phosphoglycerate mutase 1 pseudogene 7
2.3219
0.0000
5
ENSG00000242834
RPL7AP56
ribosomal protein L7a pseudogene 56
2.3219
0.0000
6
ENSG00000263468
MIR3130-2
microRNA 3130-2
2.3219
0.0005
7
ENSG00000201987
Y RNA
2.3184
0.0000
8
ENSG00000224722
serine/arginine repetitive matrix 1 (SRRM1) pseudogene
2.0271
0.0000
9
ENSG00000072849
DERL2
derlin 2
2.0000
0.0000
10
ENSG00000151773
CCDC122
coiled-coil domain containing 122
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000172361
CFAP53
cilia and flagella associated protein 53
-1.5850
1.0000
63127
ENSG00000172318
B3GALT1
beta-1,3-galactosyltransferase 1
-1.5850
0.6136
63126
ENSG00000171860
C3AR1
complement C3a receptor 1
-1.5850
0.6017
63125
ENSG00000171209
CSN3
casein kappa
-1.5850
1.0000
63124
ENSG00000169605
GKN1
gastrokine 1
-1.5850
1.0000
63123
ENSG00000167916
KRT24
keratin 24
-1.5850
0.6136
63122
ENSG00000167825
OR5I1
olfactory receptor family 5 subfamily I member 1
-1.5850
1.0000
63121
ENSG00000164105
SAP30
Sin3A associated protein 30
-1.5850
0.6017
63120
ENSG00000163735
CXCL5
C-X-C motif chemokine ligand 5
-1.5850
1.0000
63119
ENSG00000158473
CD1D
CD1d molecule
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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