Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481650

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481650 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M123	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000230202		ribosomal protein L29 (RPL29) pseudogene	4.1722	0.0000
2	ENSG00000224858	RPL29P11	ribosomal protein L29 pseudogene 11	3.9973	0.0000
3	ENSG00000250068		vacuolar protein sorting 33B (VPS33B) pseudogene	2.5850	0.0001
4	ENSG00000213997	PGAM1P7	phosphoglycerate mutase 1 pseudogene 7	2.3219	0.0000
5	ENSG00000242834	RPL7AP56	ribosomal protein L7a pseudogene 56	2.3219	0.0000
6	ENSG00000263468	MIR3130-2	microRNA 3130-2	2.3219	0.0005
7	ENSG00000201987		Y RNA	2.3184	0.0000
8	ENSG00000224722		serine/arginine repetitive matrix 1 (SRRM1) pseudogene	2.0271	0.0000
9	ENSG00000072849	DERL2	derlin 2	2.0000	0.0000
10	ENSG00000151773	CCDC122	coiled-coil domain containing 122	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000172361	CFAP53	cilia and flagella associated protein 53	-1.5850	1.0000
63127	ENSG00000172318	B3GALT1	beta-1,3-galactosyltransferase 1	-1.5850	0.6136
63126	ENSG00000171860	C3AR1	complement C3a receptor 1	-1.5850	0.6017
63125	ENSG00000171209	CSN3	casein kappa	-1.5850	1.0000
63124	ENSG00000169605	GKN1	gastrokine 1	-1.5850	1.0000
63123	ENSG00000167916	KRT24	keratin 24	-1.5850	0.6136
63122	ENSG00000167825	OR5I1	olfactory receptor family 5 subfamily I member 1	-1.5850	1.0000
63121	ENSG00000164105	SAP30	Sin3A associated protein 30	-1.5850	0.6017
63120	ENSG00000163735	CXCL5	C-X-C motif chemokine ligand 5	-1.5850	1.0000
63119	ENSG00000158473	CD1D	CD1d molecule	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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