SHOGoiN Cell Methylome: GSM2481650

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481650


Profile download
7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M123Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230202 ribosomal protein L29 (RPL29) pseudogene 4.1722 0.0000
2 ENSG00000224858 RPL29P11 ribosomal protein L29 pseudogene 11 3.9973 0.0000
3 ENSG00000250068 vacuolar protein sorting 33B (VPS33B) pseudogene 2.5850 0.0001
4 ENSG00000213997 PGAM1P7 phosphoglycerate mutase 1 pseudogene 7 2.3219 0.0000
5 ENSG00000242834 RPL7AP56 ribosomal protein L7a pseudogene 56 2.3219 0.0000
6 ENSG00000263468 MIR3130-2 microRNA 3130-2 2.3219 0.0005
7 ENSG00000201987 NA 2.3184 0.0000
8 ENSG00000224722 serine/arginine repetitive matrix 1 (SRRM1) pseudogene 2.0271 0.0000
9 ENSG00000072849 DERL2 derlin 2 2.0000 0.0000
10 ENSG00000151773 CCDC122 coiled-coil domain containing 122 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000234033 RAC1P8 Rac family small GTPase 1 pseudogene 8 -1.5850 0.2352
63340 ENSG00000233953 novel transcript -1.5850 0.6017
63339 ENSG00000233867 SLC9B1P3 solute carrier family 9 member B1 pseudogene 3 -1.5850 0.2352
63338 ENSG00000233861 MGAT2P1 MGAT2 pseudogene 1 -1.5850 1.0000
63337 ENSG00000233846 SELENOTP1 selenoprotein T pseudogene 1 -1.5850 0.2466
63336 ENSG00000233822 HIST1H2BN histone cluster 1 H2B family member n -1.5850 0.2466
63335 ENSG00000233626 protein (peptidyl-prolyl cis\/trans isomerase) NIMA-interacting, 4 (parvulin) (PIN4) pseudogene -1.5850 0.6017
63334 ENSG00000233446 pyruvate dehydrogenase kinase, isoenzyme 1 (PDK1) pseudogene -1.5850 1.0000
63333 ENSG00000233435 AGGF1P2 angiogenic factor with G-patch and FHA domains 1 pseudogene 2 -1.5850 1.0000
63332 ENSG00000233145 novel transcript -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...