Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481650

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481650


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M123Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230202 ribosomal protein L29 (RPL29) pseudogene 4.1722 0.0000
2 ENSG00000224858 RPL29P11 ribosomal protein L29 pseudogene 11 3.9973 0.0000
3 ENSG00000250068 vacuolar protein sorting 33B (VPS33B) pseudogene 2.5850 0.0001
4 ENSG00000213997 PGAM1P7 phosphoglycerate mutase 1 pseudogene 7 2.3219 0.0000
5 ENSG00000242834 RPL7AP56 ribosomal protein L7a pseudogene 56 2.3219 0.0000
6 ENSG00000263468 MIR3130-2 microRNA 3130-2 2.3219 0.0005
7 ENSG00000201987 Y RNA 2.3184 0.0000
8 ENSG00000224722 serine/arginine repetitive matrix 1 (SRRM1) pseudogene 2.0271 0.0000
9 ENSG00000072849 DERL2 derlin 2 2.0000 0.0000
10 ENSG00000151773 CCDC122 coiled-coil domain containing 122 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000172361 CFAP53 cilia and flagella associated protein 53 -1.5850 1.0000
63127 ENSG00000172318 B3GALT1 beta-1,3-galactosyltransferase 1 -1.5850 0.6136
63126 ENSG00000171860 C3AR1 complement C3a receptor 1 -1.5850 0.6017
63125 ENSG00000171209 CSN3 casein kappa -1.5850 1.0000
63124 ENSG00000169605 GKN1 gastrokine 1 -1.5850 1.0000
63123 ENSG00000167916 KRT24 keratin 24 -1.5850 0.6136
63122 ENSG00000167825 OR5I1 olfactory receptor family 5 subfamily I member 1 -1.5850 1.0000
63121 ENSG00000164105 SAP30 Sin3A associated protein 30 -1.5850 0.6017
63120 ENSG00000163735 CXCL5 C-X-C motif chemokine ligand 5 -1.5850 1.0000
63119 ENSG00000158473 CD1D CD1d molecule -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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