SHOGoiN Cell Methylome: GSM2481650
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481650 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M123 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000230202 | ribosomal protein L29 (RPL29) pseudogene | 4.1722 | 0.0000 | |
| 2 | ENSG00000224858 | RPL29P11 | ribosomal protein L29 pseudogene 11 | 3.9973 | 0.0000 |
| 3 | ENSG00000250068 | vacuolar protein sorting 33B (VPS33B) pseudogene | 2.5850 | 0.0001 | |
| 4 | ENSG00000213997 | PGAM1P7 | phosphoglycerate mutase 1 pseudogene 7 | 2.3219 | 0.0000 |
| 5 | ENSG00000242834 | RPL7AP56 | ribosomal protein L7a pseudogene 56 | 2.3219 | 0.0000 |
| 6 | ENSG00000263468 | MIR3130-2 | microRNA 3130-2 | 2.3219 | 0.0005 |
| 7 | ENSG00000201987 | NA | 2.3184 | 0.0000 | |
| 8 | ENSG00000224722 | serine/arginine repetitive matrix 1 (SRRM1) pseudogene | 2.0271 | 0.0000 | |
| 9 | ENSG00000072849 | DERL2 | derlin 2 | 2.0000 | 0.0000 |
| 10 | ENSG00000151773 | CCDC122 | coiled-coil domain containing 122 | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000234033 | RAC1P8 | Rac family small GTPase 1 pseudogene 8 | -1.5850 | 0.2352 |
| 63340 | ENSG00000233953 | novel transcript | -1.5850 | 0.6017 | |
| 63339 | ENSG00000233867 | SLC9B1P3 | solute carrier family 9 member B1 pseudogene 3 | -1.5850 | 0.2352 |
| 63338 | ENSG00000233861 | MGAT2P1 | MGAT2 pseudogene 1 | -1.5850 | 1.0000 |
| 63337 | ENSG00000233846 | SELENOTP1 | selenoprotein T pseudogene 1 | -1.5850 | 0.2466 |
| 63336 | ENSG00000233822 | HIST1H2BN | histone cluster 1 H2B family member n | -1.5850 | 0.2466 |
| 63335 | ENSG00000233626 | protein (peptidyl-prolyl cis\/trans isomerase) NIMA-interacting, 4 (parvulin) (PIN4) pseudogene | -1.5850 | 0.6017 | |
| 63334 | ENSG00000233446 | pyruvate dehydrogenase kinase, isoenzyme 1 (PDK1) pseudogene | -1.5850 | 1.0000 | |
| 63333 | ENSG00000233435 | AGGF1P2 | angiogenic factor with G-patch and FHA domains 1 pseudogene 2 | -1.5850 | 1.0000 |
| 63332 | ENSG00000233145 | novel transcript | -1.5850 | 1.0000 |
