SHOGoiN Cell Methylome: GSM2481651

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481651


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M124Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255347 zinc finger, CCHC domain containing 9 (ZCCHC9) pseudogene 3.0000 0.0000
2 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.4155 0.0000
3 ENSG00000206807 RNU6-815P RNA, U6 small nuclear 815, pseudogene 2.3219 0.0029
4 ENSG00000222658 NA 2.3219 0.0029
5 ENSG00000229668 pseudogene similar to part of small nuclear ribonucleoprotein polypeptide B (SNRPB2) 2.3219 0.0029
6 ENSG00000241879 KLF3P2 Kruppel like factor 3 pseudogene 2 2.3219 0.0029
7 ENSG00000250488 LINC02233 long intergenic non-protein coding RNA 2233 2.3219 0.0000
8 ENSG00000274317 LINC02334 long intergenic non-protein coding RNA 2334 2.3219 0.0029
9 ENSG00000275868 MIR8054 microRNA 8054 2.3219 0.0029
10 ENSG00000253072 NA 2.1610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000279726 novel transcript, antisense to PCDHA5, PCDHA4, PCDHA3, PCDHA2 and PCDHA1 -1.5233 0.0000
63340 ENSG00000204556 zinc-finger pseudogene -1.5232 0.0000
63339 ENSG00000101955 SRPX sushi repeat containing protein X-linked -1.5221 0.0002
63338 ENSG00000180628 PCGF5 polycomb group ring finger 5 -1.5220 0.0000
63337 ENSG00000280255 tec -1.5206 0.3311
63336 ENSG00000122548 KIAA0087 KIAA0087 lncRNA -1.5206 0.3311
63335 ENSG00000263575 MIR4665 microRNA 4665 -1.5200 0.0000
63334 ENSG00000277590 MIR7845 microRNA 7845 -1.5185 0.0002
63333 ENSG00000241472 PTPRG-AS1 PTPRG antisense RNA 1 -1.5184 0.0000
63332 ENSG00000199894 NA -1.5170 0.1302

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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