Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481652

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481652


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M125Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235571 SNX18P14 sorting nexin 18 pseudogene 14 2.9037 0.0000
2 ENSG00000175018 TEX36 testis expressed 36 2.8190 0.0000
3 ENSG00000200469 RNU6-112P RNA, U6 small nuclear 112, pseudogene 2.8184 0.0000
4 ENSG00000172289 OR10V1 olfactory receptor family 10 subfamily V member 1 2.8074 0.0027
5 ENSG00000223575 RBMX2P3 RBMX2 pseudogene 3 2.8074 0.0027
6 ENSG00000252041 RNA5SP228 RNA, 5S ribosomal pseudogene 228 2.8074 0.0027
7 ENSG00000277514 OR52Q1P olfactory receptor family 52 subfamily Q member 1 pseudogene 2.8074 0.0027
8 ENSG00000207251 RNU6-342P RNA, U6 small nuclear 342, pseudogene 2.7943 0.0000
9 ENSG00000224071 DNA (cytosine-5-)-methyltransferase 3 alpha (DNMT3A) pseudogene 2.7703 0.0000
10 ENSG00000221518 RNU6ATAC16P RNA, U6atac small nuclear 16, pseudogene 2.7614 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000251789 RNU4-57P RNA, U4 small nuclear 57, pseudogene -1.9645 0.0000
63219 ENSG00000105784 RUNDC3B RUN domain containing 3B -1.9630 0.0000
63218 ENSG00000265690 novel protein -1.9628 0.0000
63217 ENSG00000230804 C2orf27AP3 chromosome 2 open reading frame 27A pseudogene 3 -1.9623 0.0000
63216 ENSG00000184307 ZDHHC23 zinc finger DHHC-type palmitoyltransferase 23 -1.9616 0.0000
63215 ENSG00000164932 CTHRC1 collagen triple helix repeat containing 1 -1.9612 0.0000
63214 ENSG00000123094 RASSF8 Ras association domain family member 8 -1.9611 0.0000
63213 ENSG00000128917 DLL4 delta like canonical Notch ligand 4 -1.9609 0.0000
63212 ENSG00000250846 EPHA5-AS1 EPHA5 antisense RNA 1 -1.9608 0.0000
10 ENSG00000221518 RNU6ATAC16P RNA, U6atac small nuclear 16, pseudogene 2.7614 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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