Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481652

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481652


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M125Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235571 SNX18P14 sorting nexin 18 pseudogene 14 2.9037 0.0000
2 ENSG00000175018 TEX36 testis expressed 36 2.8190 0.0000
3 ENSG00000200469 RNU6-112P RNA, U6 small nuclear 112, pseudogene 2.8184 0.0000
4 ENSG00000172289 OR10V1 olfactory receptor family 10 subfamily V member 1 2.8074 0.0027
5 ENSG00000223575 RBMX2P3 RBMX2 pseudogene 3 2.8074 0.0027
6 ENSG00000252041 RNA5SP228 RNA, 5S ribosomal pseudogene 228 2.8074 0.0027
7 ENSG00000277514 OR52Q1P olfactory receptor family 52 subfamily Q member 1 pseudogene 2.8074 0.0027
8 ENSG00000207251 RNU6-342P RNA, U6 small nuclear 342, pseudogene 2.7943 0.0000
9 ENSG00000224071 DNMT3AP1 DNA methyltransferase 3A pseudogene 1 2.7703 0.0000
10 ENSG00000221518 RNU6ATAC16P RNA, U6atac small nuclear 16, pseudogene 2.7614 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000243541 RN7SL104P RNA, 7SL, cytoplasmic 104, pseudogene -1.9410 0.0000
63172 ENSG00000188856 RPSAP47 ribosomal protein SA pseudogene 47 -1.9407 0.0001
63171 ENSG00000261356 RAB31, member RAS oncogene family (RAB31) pseudogene -1.9401 0.0000
63170 ENSG00000260251 zinc finger protein 161 homolog (mouse) (ZFP161) pseudogene -1.9401 0.0000
63169 ENSG00000276487 novel transcript -1.9394 0.0000
63168 ENSG00000261441 novel transcript, antisense to POLG -1.9389 0.0000
63167 ENSG00000260308 kinase suppressor of ras 1 (KSR1) pseudogene -1.9388 0.0000
63165 ENSG00000229656 ITGB1-DT ITGB1 divergent transcript -1.9382 0.0000
63164 ENSG00000234327 ZNF232-AS1 ZNF232 antisense RNA 1 -1.9375 0.0000
10 ENSG00000221518 RNU6ATAC16P RNA, U6atac small nuclear 16, pseudogene 2.7614 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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