SHOGoiN Cell Methylome: GSM2481652

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481652


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M125Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235571 SNX18P14 sorting nexin 18 pseudogene 14 2.9037 0.0000
2 ENSG00000175018 TEX36 testis expressed 36 2.8190 0.0000
3 ENSG00000200469 RNU6-112P RNA, U6 small nuclear 112, pseudogene 2.8184 0.0000
4 ENSG00000172289 OR10V1 olfactory receptor family 10 subfamily V member 1 2.8074 0.0027
5 ENSG00000223575 RBMX2P3 RBMX2 pseudogene 3 2.8074 0.0027
6 ENSG00000252041 RNA5SP228 RNA, 5S ribosomal pseudogene 228 2.8074 0.0027
7 ENSG00000277514 OR52Q1P olfactory receptor family 52 subfamily Q member 1 pseudogene 2.8074 0.0027
8 ENSG00000207251 RNU6-342P RNA, U6 small nuclear 342, pseudogene 2.7943 0.0000
9 ENSG00000224071 DNA (cytosine-5-)-methyltransferase 3 alpha (DNMT3A) pseudogene 2.7703 0.0000
10 ENSG00000221518 RNU6ATAC16P RNA, U6atac small nuclear 16, pseudogene 2.7614 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000203618 GP1BB glycoprotein Ib platelet subunit beta -2.0009 0.0000
63340 ENSG00000164414 SLC35A1 solute carrier family 35 member A1 -2.0008 0.0000
63339 ENSG00000165655 ZNF503 zinc finger protein 503 -2.0004 0.0000
63338 ENSG00000087302 RTRAF RNA transcription, translation and transport factor -2.0002 0.0000
63337 ENSG00000284436 MIR6869 microRNA 6869 -2.0000 0.0907
63336 ENSG00000283378 CNTNAP3C contactin associated protein like 3C -2.0000 0.0000
63335 ENSG00000280096 TEC -2.0000 0.2986
63334 ENSG00000279299 novel transcript -2.0000 0.2986
63333 ENSG00000278473 IGHV3-41 immunoglobulin heavy variable 3-41 (pseudogene) -2.0000 0.0314
63332 ENSG00000278331 RNU6-156P RNA, U6 small nuclear 156, pseudogene -2.0000 0.0018

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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