Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481653

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481653


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M126Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232924 ELOCP4 elongin C pseudogene 4 3.6610 0.0000
2 ENSG00000137440 FGFBP1 fibroblast growth factor binding protein 1 3.1699 0.0000
3 ENSG00000125352 RNF113A ring finger protein 113A 3.0000 0.0005
4 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 3.0000 0.0005
5 ENSG00000211578 MIR766 microRNA 766 3.0000 0.0005
6 ENSG00000274154 ribosomal protein S23 (RPS23) pseudogene 2.9037 0.0000
7 ENSG00000205100 HSP90AA4P heat shock protein 90 alpha family class A member 4, pseudogene 2.8862 0.0000
8 ENSG00000251821 RNU6-583P RNA, U6 small nuclear 583, pseudogene 2.8074 0.0000
9 ENSG00000267455 novel transcript, antisense GNAL 2.8074 0.0000
10 ENSG00000268267 SIGLEC29P sialic acid binding Ig like lectin 29, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000211964 IGHV3-48 immunoglobulin heavy variable 3-48 -2.0000 0.0340
63127 ENSG00000203757 OR6K3 olfactory receptor family 6 subfamily K member 3 -2.0000 0.5556
63126 ENSG00000189377 CXCL17 C-X-C motif chemokine ligand 17 -2.0000 0.0001
63125 ENSG00000182141 ZNF708 zinc finger protein 708 -2.0000 0.0340
63124 ENSG00000164751 PEX2 peroxisomal biogenesis factor 2 -2.0000 0.0000
63123 ENSG00000146618 FERD3L Fer3 like bHLH transcription factor -2.0000 0.0041
63122 ENSG00000139515 PDX1 pancreatic and duodenal homeobox 1 -2.0000 0.0001
63121 ENSG00000136197 C7orf25 chromosome 7 open reading frame 25 -2.0000 0.5556
63120 ENSG00000127951 FGL2 fibrinogen like 2 -2.0000 0.5556
63119 ENSG00000127081 ZNF484 zinc finger protein 484 -2.0000 0.5556

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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