SHOGoiN Cell Methylome: GSM2481653

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481653


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M126Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232924 ELOCP4 elongin C pseudogene 4 3.6610 0.0000
2 ENSG00000137440 FGFBP1 fibroblast growth factor binding protein 1 3.1699 0.0000
3 ENSG00000125352 RNF113A ring finger protein 113A 3.0000 0.0005
4 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 3.0000 0.0005
5 ENSG00000211578 MIR766 microRNA 766 3.0000 0.0005
6 ENSG00000274154 ribosomal protein S23 (RPS23) pseudogene 2.9037 0.0000
7 ENSG00000205100 HSP90AA4P heat shock protein 90 alpha family class A member 4, pseudogene 2.8862 0.0000
8 ENSG00000251821 RNU6-583P RNA, U6 small nuclear 583, pseudogene 2.8074 0.0000
9 ENSG00000267455 novel transcript, antisense GNAL 2.8074 0.0000
10 ENSG00000268267 SIGLEC29P sialic acid binding Ig like lectin 29, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000151233 GXYLT1 glucoside xylosyltransferase 1 -2.0891 0.0000
63340 ENSG00000129757 CDKN1C cyclin dependent kinase inhibitor 1C -2.0885 0.0000
63339 ENSG00000163499 CRYBA2 crystallin beta A2 -2.0881 0.0000
63338 ENSG00000162913 OBSCN-AS1 OBSCN antisense RNA 1 -2.0881 0.0000
63337 ENSG00000269897 COMMD3-BMI1 COMMD3-BMI1 readthrough -2.0880 0.0000
63336 ENSG00000148444 COMMD3 COMM domain containing 3 -2.0880 0.0000
63335 ENSG00000277986 NA -2.0864 0.0000
63334 ENSG00000124535 WRNIP1 Werner helicase interacting protein 1 -2.0859 0.0000
63333 ENSG00000169992 NLGN2 neuroligin 2 -2.0856 0.0000
63332 ENSG00000147526 TACC1 transforming acidic coiled-coil containing protein 1 -2.0853 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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