Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481654

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481654


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M127Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249458 novel transcript 3.1699 0.0004
2 ENSG00000250263 LINC02509 long intergenic non-protein coding RNA 2509 3.1699 0.0004
3 ENSG00000237444 CTAGE family, member 4 (CTAGE4) pseudogene 3.0850 0.0000
4 ENSG00000127993 RBM48 RNA binding motif protein 48 3.0000 0.0012
5 ENSG00000226779 NAALADL2-AS2 NAALADL2 antisense RNA 2 3.0000 0.0000
6 ENSG00000258406 TUBBP3 tubulin beta pseudogene 3 3.0000 0.0000
7 ENSG00000261130 novel protein 2.9061 0.0000
9 ENSG00000223466 LINC01825 long intergenic non-protein coding RNA 1825 2.7544 0.0000
10 ENSG00000234639 protein phosphatase 2, regulatory subunit B', gamma isoform (PPP2R5C) pseudogene 2.6459 0.0000
63119 ENSG00000267677 novel transcript -1.8592 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000111845 PAK1IP1 PAK1 interacting protein 1 -1.8629 0.0000
63127 ENSG00000128039 SRD5A3 steroid 5 alpha-reductase 3 -1.8625 0.0000
63126 ENSG00000273759 novel transcript -1.8622 0.0000
63125 ENSG00000249877 novel transcript -1.8617 0.0278
63124 ENSG00000237425 RPSAP2 ribosomal protein SA pseudogene 2 -1.8617 0.0000
63123 ENSG00000272692 novel transcript -1.8616 0.0000
63122 ENSG00000258890 CEP95 centrosomal protein 95 -1.8612 0.0000
63121 ENSG00000178538 CA8 carbonic anhydrase 8 -1.8606 0.0000
63120 ENSG00000052802 MSMO1 methylsterol monooxygenase 1 -1.8605 0.0000
63119 ENSG00000267677 novel transcript -1.8592 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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