SHOGoiN Cell Methylome: GSM2481654

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481654


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M127Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249458 novel transcript 3.1699 0.0004
2 ENSG00000250263 LINC02509 long intergenic non-protein coding RNA 2509 3.1699 0.0004
3 ENSG00000237444 CTAGE family, member 4 (CTAGE4) pseudogene 3.0850 0.0000
4 ENSG00000127993 RBM48 RNA binding motif protein 48 3.0000 0.0012
5 ENSG00000226779 NAALADL2-AS2 NAALADL2 antisense RNA 2 3.0000 0.0000
6 ENSG00000258406 Tubulin alpha-1B chain (TUB1A) pseudogene 3.0000 0.0000
7 ENSG00000261130 MPV17 mitochondrial inner membrane protein like 2.9061 0.0000
9 ENSG00000223466 LINC01825 long intergenic non-protein coding RNA 1825 2.7544 0.0000
10 ENSG00000234639 protein phosphatase 2, regulatory subunit B', gamma isoform (PPP2R5C) pseudogene 2.6459 0.0000
63332 ENSG00000118655 DCLRE1B DNA cross-link repair 1B -1.9582 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000278915 novel transcript, antisense to PCDHA12 -1.9606 0.0000
63340 ENSG00000280331 TEC -1.9605 0.0000
63339 ENSG00000251664 PCDHA12 protocadherin alpha 12 -1.9602 0.0000
63338 ENSG00000136715 SAP130 Sin3A associated protein 130 -1.9599 0.0000
63337 ENSG00000113205 PCDHB3 protocadherin beta 3 -1.9597 0.0000
63336 ENSG00000236255 novel transcript -1.9590 0.0000
63335 ENSG00000257700 novel transcript, antisense to KRT77 -1.9589 0.0000
63334 ENSG00000169230 PRELID1 PRELI domain containing 1 -1.9585 0.0000
63333 ENSG00000135333 EPHA7 EPH receptor A7 -1.9582 0.0000
63332 ENSG00000118655 DCLRE1B DNA cross-link repair 1B -1.9582 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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