Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481655
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481655
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP074598
SRP074598_M128
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Sperm
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000231130
HLA-T
major histocompatibility complex, class I, T (pseudogene)
3.1699
0.0002
2
ENSG00000225203
novel transcript
3.0000
0.0000
3
ENSG00000240271
ribosomal protein L29 (RPL29) pseudogene
3.0000
0.0005
4
ENSG00000259211
novel transcript, antisense to BAHD1
2.9195
0.0000
5
ENSG00000188694
KRTAP24-1
keratin associated protein 24-1
2.8074
0.0000
6
ENSG00000201901
RN7SKP48
RN7SK pseudogene 48
2.8074
0.0015
7
ENSG00000211590
MIR802
microRNA 802
2.8074
0.0000
8
ENSG00000218586
Rho GTPase activating protein 5 (ARHGAP5) pseudogene
2.8074
0.0015
9
ENSG00000227161
novel transcript, sense overlapping BNIP2 and GTF2A2
2.8074
0.0000
10
ENSG00000255772
LINC01479
long intergenic non-protein coding RNA 1479
2.8074
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000125631
HTR5BP
5-hydroxytryptamine receptor 5B, pseudogene
-1.9932
0.0000
63127
ENSG00000277888
MIR6846
microRNA 6846
-1.9924
0.0000
63126
ENSG00000269609
C10orf95-AS1
C10orf95 antisense RNA 1
-1.9923
0.0000
63125
ENSG00000123407
HOXC12
homeobox C12
-1.9921
0.0000
63124
ENSG00000105219
CCNP
cyclin P
-1.9903
0.0000
63123
ENSG00000278907
novel transcript, antisense to PCDHA9
-1.9898
0.0000
63122
ENSG00000204961
PCDHA9
protocadherin alpha 9
-1.9898
0.0000
63121
ENSG00000254102
novel transcript
-1.9896
0.0000
63120
ENSG00000187553
CYP26C1
cytochrome P450 family 26 subfamily C member 1
-1.9895
0.0000
63119
ENSG00000108468
CBX1
chromobox 1
-1.9886
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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