SHOGoiN Cell Methylome: GSM2481655
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481655 Profile download | 5090101000001000000000-236 | Sequence Read Archive | SRP074598 | SRP074598_M128 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Sperm | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000231130 | HLA-T | major histocompatibility complex, class I, T (pseudogene) | 3.1699 | 0.0002 |
| 2 | ENSG00000225203 | novel transcript | 3.0000 | 0.0000 | |
| 3 | ENSG00000240271 | ribosomal protein L29 (RPL29) pseudogene | 3.0000 | 0.0005 | |
| 4 | ENSG00000259211 | novel transcript, antisense to BAHD1 | 2.9195 | 0.0000 | |
| 5 | ENSG00000188694 | KRTAP24-1 | keratin associated protein 24-1 | 2.8074 | 0.0000 |
| 6 | ENSG00000201901 | RN7SKP48 | RN7SK pseudogene 48 | 2.8074 | 0.0015 |
| 7 | ENSG00000211590 | MIR802 | microRNA 802 | 2.8074 | 0.0000 |
| 8 | ENSG00000218586 | Rho GTPase activating protein 5 (ARHGAP5) pseudogene | 2.8074 | 0.0015 | |
| 9 | ENSG00000227161 | novel transcript, sense overlapping BNIP2 and GTF2A2 | 2.8074 | 0.0000 | |
| 10 | ENSG00000255772 | LINC01479 | long intergenic non-protein coding RNA 1479 | 2.8074 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000254907 | novel transcript, antisense to API5 and TTC17 | -2.0798 | 0.0000 | |
| 63340 | ENSG00000279069 | novel transcript | -2.0779 | 0.0000 | |
| 63339 | ENSG00000153237 | CCDC148 | coiled-coil domain containing 148 | -2.0763 | 0.0197 |
| 63338 | ENSG00000176236 | RPP38-DT | RPP38 divergent transcript | -2.0762 | 0.0000 |
| 63337 | ENSG00000152464 | RPP38 | ribonuclease P/MRP subunit p38 | -2.0762 | 0.0000 |
| 63336 | ENSG00000247416 | novel transcript, antisense to NCAM1 | -2.0762 | 0.0000 | |
| 63335 | ENSG00000276406 | novel transcript | -2.0758 | 0.0000 | |
| 63334 | ENSG00000165105 | RASEF | RAS and EF-hand domain containing | -2.0731 | 0.0000 |
| 63333 | ENSG00000211958 | IGHV3-38 | immunoglobulin heavy variable 3-38 (non-functional) | -2.0723 | 0.0000 |
| 63332 | ENSG00000283809 | novel protein | -2.0715 | 0.0000 |
