Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481655

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481655


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M128Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231130 HLA-T major histocompatibility complex, class I, T (pseudogene) 3.1699 0.0002
2 ENSG00000225203 novel transcript 3.0000 0.0000
3 ENSG00000240271 ribosomal protein L29 (RPL29) pseudogene 3.0000 0.0005
4 ENSG00000259211 novel transcript, antisense to BAHD1 2.9195 0.0000
5 ENSG00000188694 KRTAP24-1 keratin associated protein 24-1 2.8074 0.0000
6 ENSG00000201901 RN7SKP48 RN7SK pseudogene 48 2.8074 0.0015
7 ENSG00000211590 MIR802 microRNA 802 2.8074 0.0000
8 ENSG00000218586 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.8074 0.0015
9 ENSG00000227161 novel transcript, sense overlapping BNIP2 and GTF2A2 2.8074 0.0000
10 ENSG00000255772 LINC01479 long intergenic non-protein coding RNA 1479 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000125631 HTR5BP 5-hydroxytryptamine receptor 5B, pseudogene -1.9932 0.0000
63127 ENSG00000277888 MIR6846 microRNA 6846 -1.9924 0.0000
63126 ENSG00000269609 C10orf95-AS1 C10orf95 antisense RNA 1 -1.9923 0.0000
63125 ENSG00000123407 HOXC12 homeobox C12 -1.9921 0.0000
63124 ENSG00000105219 CCNP cyclin P -1.9903 0.0000
63123 ENSG00000278907 novel transcript, antisense to PCDHA9 -1.9898 0.0000
63122 ENSG00000204961 PCDHA9 protocadherin alpha 9 -1.9898 0.0000
63121 ENSG00000254102 novel transcript -1.9896 0.0000
63120 ENSG00000187553 CYP26C1 cytochrome P450 family 26 subfamily C member 1 -1.9895 0.0000
63119 ENSG00000108468 CBX1 chromobox 1 -1.9886 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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