SHOGoiN Cell Methylome: GSM2481655

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481655


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M128Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231130 HLA-T major histocompatibility complex, class I, T (pseudogene) 3.1699 0.0002
2 ENSG00000225203 novel transcript 3.0000 0.0000
3 ENSG00000240271 ribosomal protein L29 (RPL29) pseudogene 3.0000 0.0005
4 ENSG00000259211 novel transcript, antisense to BAHD1 2.9195 0.0000
5 ENSG00000188694 KRTAP24-1 keratin associated protein 24-1 2.8074 0.0000
6 ENSG00000201901 RN7SKP48 RN7SK pseudogene 48 2.8074 0.0015
7 ENSG00000211590 MIR802 microRNA 802 2.8074 0.0000
8 ENSG00000218586 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.8074 0.0015
9 ENSG00000227161 novel transcript, sense overlapping BNIP2 and GTF2A2 2.8074 0.0000
10 ENSG00000255772 LINC01479 long intergenic non-protein coding RNA 1479 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000254907 novel transcript, antisense to API5 and TTC17 -2.0798 0.0000
63340 ENSG00000279069 novel transcript -2.0779 0.0000
63339 ENSG00000153237 CCDC148 coiled-coil domain containing 148 -2.0763 0.0197
63338 ENSG00000176236 RPP38-DT RPP38 divergent transcript -2.0762 0.0000
63337 ENSG00000152464 RPP38 ribonuclease P/MRP subunit p38 -2.0762 0.0000
63336 ENSG00000247416 novel transcript, antisense to NCAM1 -2.0762 0.0000
63335 ENSG00000276406 novel transcript -2.0758 0.0000
63334 ENSG00000165105 RASEF RAS and EF-hand domain containing -2.0731 0.0000
63333 ENSG00000211958 IGHV3-38 immunoglobulin heavy variable 3-38 (non-functional) -2.0723 0.0000
63332 ENSG00000283809 novel protein -2.0715 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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