Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481655

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481655 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP074598	SRP074598_M128	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Sperm	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000231130	HLA-T	major histocompatibility complex, class I, T (pseudogene)	3.1699	0.0002
2	ENSG00000225203		novel transcript	3.0000	0.0000
3	ENSG00000240271		ribosomal protein L29 (RPL29) pseudogene	3.0000	0.0005
4	ENSG00000259211		novel transcript, antisense to BAHD1	2.9195	0.0000
5	ENSG00000188694	KRTAP24-1	keratin associated protein 24-1	2.8074	0.0000
6	ENSG00000201901	RN7SKP48	RN7SK pseudogene 48	2.8074	0.0015
7	ENSG00000211590	MIR802	microRNA 802	2.8074	0.0000
8	ENSG00000218586		Rho GTPase activating protein 5 (ARHGAP5) pseudogene	2.8074	0.0015
9	ENSG00000227161		novel transcript, sense overlapping BNIP2 and GTF2A2	2.8074	0.0000
10	ENSG00000255772	LINC01479	long intergenic non-protein coding RNA 1479	2.8074	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000125631	HTR5BP	5-hydroxytryptamine receptor 5B, pseudogene	-1.9932	0.0000
63127	ENSG00000277888	MIR6846	microRNA 6846	-1.9924	0.0000
63126	ENSG00000269609	C10orf95-AS1	C10orf95 antisense RNA 1	-1.9923	0.0000
63125	ENSG00000123407	HOXC12	homeobox C12	-1.9921	0.0000
63124	ENSG00000105219	CCNP	cyclin P	-1.9903	0.0000
63123	ENSG00000278907		novel transcript, antisense to PCDHA9	-1.9898	0.0000
63122	ENSG00000204961	PCDHA9	protocadherin alpha 9	-1.9898	0.0000
63121	ENSG00000254102		novel transcript	-1.9896	0.0000
63120	ENSG00000187553	CYP26C1	cytochrome P450 family 26 subfamily C member 1	-1.9895	0.0000
63119	ENSG00000108468	CBX1	chromobox 1	-1.9886	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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