SHOGoiN Cell Methylome: GSM2481656
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481656 Profile download | 5090101000001000000000-236 | Sequence Read Archive | SRP074598 | SRP074598_M129 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Sperm | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000211578 | MIR766 | microRNA 766 | 3.1699 | 0.0003 |
| 2 | ENSG00000236814 | proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene | 3.1699 | 0.0000 | |
| 3 | ENSG00000260590 | double homeobox (DUX) pseudogene | 3.0491 | 0.0000 | |
| 4 | ENSG00000250974 | LINC02196 | long intergenic non-protein coding RNA 2196 | 2.8628 | 0.0000 |
| 5 | ENSG00000125352 | RNF113A | ring finger protein 113A | 2.8074 | 0.0025 |
| 6 | ENSG00000125356 | NDUFA1 | NADH:ubiquinone oxidoreductase subunit A1 | 2.8074 | 0.0025 |
| 7 | ENSG00000166265 | CYYR1 | cysteine and tyrosine rich 1 | 2.8074 | 0.0025 |
| 8 | ENSG00000272134 | neighbor of BRCA1 gene 2 (non-protein coding) (NBR2) pseudogene | 2.8074 | 0.0000 | |
| 9 | ENSG00000283532 | MIR4317 | microRNA 4317 | 2.8074 | 0.0025 |
| 10 | ENSG00000243115 | RN7SL849P | RNA, 7SL, cytoplasmic 849, pseudogene | 2.7500 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000226026 | novel transcript | -2.0000 | 0.0000 | |
| 63340 | ENSG00000224439 | RPSAP10 | ribosomal protein SA pseudogene 10 | -2.0000 | 0.3025 |
| 63339 | ENSG00000223935 | LGALSL-DT | LGALSL divergent transcript | -2.0000 | 0.0054 |
| 63338 | ENSG00000216352 | citrate synthase (CS) pseudogene | -2.0000 | 0.3025 | |
| 63337 | ENSG00000213972 | heterogeneous nuclear ribonucleoprotein pseudogene | -2.0000 | 0.3025 | |
| 63336 | ENSG00000203910 | C1orf146 | chromosome 1 open reading frame 146 | -2.0000 | 0.0001 |
| 63335 | ENSG00000202034 | RNU6-399P | RNA, U6 small nuclear 399, pseudogene | -2.0000 | 0.3025 |
| 63334 | ENSG00000200462 | RNU6-727P | RNA, U6 small nuclear 727, pseudogene | -2.0000 | 0.0054 |
| 63333 | ENSG00000199839 | RNA5SP150 | RNA, 5S ribosomal pseudogene 150 | -2.0000 | 0.3025 |
| 63332 | ENSG00000185296 | aurora kinase A interacting protein 1 (AURKAIP1) pseudogene | -2.0000 | 0.3025 |
