Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481656

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481656 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP074598	SRP074598_M129	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Sperm	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000211578	MIR766	microRNA 766	3.1699	0.0003
2	ENSG00000236814		proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene	3.1699	0.0000
3	ENSG00000260590		double homeobox (DUX) pseudogene	3.0491	0.0000
4	ENSG00000250974	LINC02196	long intergenic non-protein coding RNA 2196	2.8628	0.0000
5	ENSG00000125352	RNF113A	ring finger protein 113A	2.8074	0.0025
6	ENSG00000125356	NDUFA1	NADH:ubiquinone oxidoreductase subunit A1	2.8074	0.0025
7	ENSG00000166265	CYYR1	cysteine and tyrosine rich 1	2.8074	0.0025
8	ENSG00000272134		neighbor of BRCA1 gene 2 (non-protein coding) (NBR2) pseudogene	2.8074	0.0000
9	ENSG00000283532	MIR4317	microRNA 4317	2.8074	0.0025
10	ENSG00000243115	RN7SL849P	RNA, 7SL, cytoplasmic 849, pseudogene	2.7500	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000113739	STC2	stanniocalcin 2	-1.9369	0.0000
63220	ENSG00000135624	CCT7	chaperonin containing TCP1 subunit 7	-1.9366	0.0000
63219	ENSG00000144057	ST6GAL2	ST6 beta-galactoside alpha-2,6-sialyltransferase 2	-1.9365	0.0000
63218	ENSG00000176597	B3GNT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	-1.9363	0.0000
63217	ENSG00000153790	C7orf31	chromosome 7 open reading frame 31	-1.9361	0.0000
63216	ENSG00000250365		novel transcript, antisense to C14orf126	-1.9360	0.0000
63215	ENSG00000120963	ZNF706	zinc finger protein 706	-1.9354	0.0000
63214	ENSG00000189184	PCDH18	protocadherin 18	-1.9352	0.0000
63213	ENSG00000206168		novel pseudogene	-1.9351	0.0000
63212	ENSG00000134627	PIWIL4	piwi like RNA-mediated gene silencing 4	-1.9344	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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