Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2481656
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481656
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP074598
SRP074598_M129
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Sperm
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000211578
MIR766
microRNA 766
3.1699
0.0003
2
ENSG00000236814
proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene
3.1699
0.0000
3
ENSG00000260590
double homeobox (DUX) pseudogene
3.0491
0.0000
4
ENSG00000250974
LINC02196
long intergenic non-protein coding RNA 2196
2.8628
0.0000
5
ENSG00000125352
RNF113A
ring finger protein 113A
2.8074
0.0025
6
ENSG00000125356
NDUFA1
NADH:ubiquinone oxidoreductase subunit A1
2.8074
0.0025
7
ENSG00000166265
CYYR1
cysteine and tyrosine rich 1
2.8074
0.0025
8
ENSG00000272134
neighbor of BRCA1 gene 2 (non-protein coding) (NBR2) pseudogene
2.8074
0.0000
9
ENSG00000283532
MIR4317
microRNA 4317
2.8074
0.0025
10
ENSG00000243115
RN7SL849P
RNA, 7SL, cytoplasmic 849, pseudogene
2.7500
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000106511
MEOX2
mesenchyme homeobox 2
-1.9103
0.0000
63172
ENSG00000214290
COLCA2
colorectal cancer associated 2
-1.9101
0.0000
63171
ENSG00000196167
COLCA1
colorectal cancer associated 1
-1.9101
0.0000
63170
ENSG00000177675
CD163L1
CD163 molecule like 1
-1.9097
0.0000
63169
ENSG00000054803
CBLN4
cerebellin 4 precursor
-1.9096
0.0000
63168
ENSG00000106689
LHX2
LIM homeobox 2
-1.9094
0.0000
63167
ENSG00000267353
novel transcript
-1.9088
0.0000
63166
ENSG00000273107
novel transcript
-1.9080
0.0000
63165
ENSG00000175348
TMEM9B
TMEM9 domain family member B
-1.9075
0.0000
63164
ENSG00000263412
NFE2L1-DT
NFE2L1 divergent transcript
-1.9066
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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