SHOGoiN Cell Methylome: GSM2481656

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481656


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M129Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211578 MIR766 microRNA 766 3.1699 0.0003
2 ENSG00000236814 proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene 3.1699 0.0000
3 ENSG00000260590 double homeobox (DUX) pseudogene 3.0491 0.0000
4 ENSG00000250974 LINC02196 long intergenic non-protein coding RNA 2196 2.8628 0.0000
5 ENSG00000125352 RNF113A ring finger protein 113A 2.8074 0.0025
6 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.8074 0.0025
7 ENSG00000166265 CYYR1 cysteine and tyrosine rich 1 2.8074 0.0025
8 ENSG00000272134 neighbor of BRCA1 gene 2 (non-protein coding) (NBR2) pseudogene 2.8074 0.0000
9 ENSG00000283532 MIR4317 microRNA 4317 2.8074 0.0025
10 ENSG00000243115 RN7SL849P RNA, 7SL, cytoplasmic 849, pseudogene 2.7500 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000226026 novel transcript -2.0000 0.0000
63340 ENSG00000224439 RPSAP10 ribosomal protein SA pseudogene 10 -2.0000 0.3025
63339 ENSG00000223935 LGALSL-DT LGALSL divergent transcript -2.0000 0.0054
63338 ENSG00000216352 citrate synthase (CS) pseudogene -2.0000 0.3025
63337 ENSG00000213972 heterogeneous nuclear ribonucleoprotein pseudogene -2.0000 0.3025
63336 ENSG00000203910 C1orf146 chromosome 1 open reading frame 146 -2.0000 0.0001
63335 ENSG00000202034 RNU6-399P RNA, U6 small nuclear 399, pseudogene -2.0000 0.3025
63334 ENSG00000200462 RNU6-727P RNA, U6 small nuclear 727, pseudogene -2.0000 0.0054
63333 ENSG00000199839 RNA5SP150 RNA, 5S ribosomal pseudogene 150 -2.0000 0.3025
63332 ENSG00000185296 aurora kinase A interacting protein 1 (AURKAIP1) pseudogene -2.0000 0.3025

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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