Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481656

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481656 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP074598	SRP074598_M129	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Sperm	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000211578	MIR766	microRNA 766	3.1699	0.0003
2	ENSG00000236814		proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene	3.1699	0.0000
3	ENSG00000260590		double homeobox (DUX) pseudogene	3.0491	0.0000
4	ENSG00000250974	LINC02196	long intergenic non-protein coding RNA 2196	2.8628	0.0000
5	ENSG00000125352	RNF113A	ring finger protein 113A	2.8074	0.0025
6	ENSG00000125356	NDUFA1	NADH:ubiquinone oxidoreductase subunit A1	2.8074	0.0025
7	ENSG00000166265	CYYR1	cysteine and tyrosine rich 1	2.8074	0.0025
8	ENSG00000272134		neighbor of BRCA1 gene 2 (non-protein coding) (NBR2) pseudogene	2.8074	0.0000
9	ENSG00000283532	MIR4317	microRNA 4317	2.8074	0.0025
10	ENSG00000243115	RN7SL849P	RNA, 7SL, cytoplasmic 849, pseudogene	2.7500	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000106511	MEOX2	mesenchyme homeobox 2	-1.9103	0.0000
63172	ENSG00000214290	COLCA2	colorectal cancer associated 2	-1.9101	0.0000
63171	ENSG00000196167	COLCA1	colorectal cancer associated 1	-1.9101	0.0000
63170	ENSG00000177675	CD163L1	CD163 molecule like 1	-1.9097	0.0000
63169	ENSG00000054803	CBLN4	cerebellin 4 precursor	-1.9096	0.0000
63168	ENSG00000106689	LHX2	LIM homeobox 2	-1.9094	0.0000
63167	ENSG00000267353		novel transcript	-1.9088	0.0000
63166	ENSG00000273107		novel transcript	-1.9080	0.0000
63165	ENSG00000175348	TMEM9B	TMEM9 domain family member B	-1.9075	0.0000
63164	ENSG00000263412	NFE2L1-DT	NFE2L1 divergent transcript	-1.9066	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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