Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481656

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481656


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M129Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211578 MIR766 microRNA 766 3.1699 0.0003
2 ENSG00000236814 proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene 3.1699 0.0000
3 ENSG00000260590 double homeobox (DUX) pseudogene 3.0491 0.0000
4 ENSG00000250974 LINC02196 long intergenic non-protein coding RNA 2196 2.8628 0.0000
5 ENSG00000125352 RNF113A ring finger protein 113A 2.8074 0.0025
6 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.8074 0.0025
7 ENSG00000166265 CYYR1 cysteine and tyrosine rich 1 2.8074 0.0025
8 ENSG00000272134 neighbor of BRCA1 gene 2 (non-protein coding) (NBR2) pseudogene 2.8074 0.0000
9 ENSG00000283532 MIR4317 microRNA 4317 2.8074 0.0025
10 ENSG00000243115 RN7SL849P RNA, 7SL, cytoplasmic 849, pseudogene 2.7500 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000113739 STC2 stanniocalcin 2 -1.9369 0.0000
63220 ENSG00000135624 CCT7 chaperonin containing TCP1 subunit 7 -1.9366 0.0000
63219 ENSG00000144057 ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 -1.9365 0.0000
63218 ENSG00000176597 B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 -1.9363 0.0000
63217 ENSG00000153790 C7orf31 chromosome 7 open reading frame 31 -1.9361 0.0000
63216 ENSG00000250365 novel transcript, antisense to C14orf126 -1.9360 0.0000
63215 ENSG00000120963 ZNF706 zinc finger protein 706 -1.9354 0.0000
63214 ENSG00000189184 PCDH18 protocadherin 18 -1.9352 0.0000
63213 ENSG00000206168 novel pseudogene -1.9351 0.0000
63212 ENSG00000134627 PIWIL4 piwi like RNA-mediated gene silencing 4 -1.9344 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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