Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481656

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481656


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M129Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211578 MIR766 microRNA 766 3.1699 0.0003
2 ENSG00000236814 proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene 3.1699 0.0000
3 ENSG00000260590 double homeobox (DUX) pseudogene 3.0491 0.0000
4 ENSG00000250974 LINC02196 long intergenic non-protein coding RNA 2196 2.8628 0.0000
5 ENSG00000125352 RNF113A ring finger protein 113A 2.8074 0.0025
6 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.8074 0.0025
7 ENSG00000166265 CYYR1 cysteine and tyrosine rich 1 2.8074 0.0025
8 ENSG00000272134 neighbor of BRCA1 gene 2 (non-protein coding) (NBR2) pseudogene 2.8074 0.0000
9 ENSG00000283532 MIR4317 microRNA 4317 2.8074 0.0025
10 ENSG00000243115 RN7SL849P RNA, 7SL, cytoplasmic 849, pseudogene 2.7500 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000106511 MEOX2 mesenchyme homeobox 2 -1.9103 0.0000
63172 ENSG00000214290 COLCA2 colorectal cancer associated 2 -1.9101 0.0000
63171 ENSG00000196167 COLCA1 colorectal cancer associated 1 -1.9101 0.0000
63170 ENSG00000177675 CD163L1 CD163 molecule like 1 -1.9097 0.0000
63169 ENSG00000054803 CBLN4 cerebellin 4 precursor -1.9096 0.0000
63168 ENSG00000106689 LHX2 LIM homeobox 2 -1.9094 0.0000
63167 ENSG00000267353 novel transcript -1.9088 0.0000
63166 ENSG00000273107 novel transcript -1.9080 0.0000
63165 ENSG00000175348 TMEM9B TMEM9 domain family member B -1.9075 0.0000
63164 ENSG00000263412 NFE2L1-DT NFE2L1 divergent transcript -1.9066 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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