Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481657

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481657


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M130Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207763 MIR617 microRNA 617 2.9183 0.0000
2 ENSG00000183891 TTC32 tetratricopeptide repeat domain 32 2.8074 0.0024
3 ENSG00000232385 RPS3AP25 RPS3A pseudogene 25 2.8074 0.0024
4 ENSG00000271070 GMCL1P2 GMCL1 pseudogene 2 2.8074 0.0000
5 ENSG00000271991 TTC32-DT TTC32 divergent transcript 2.8074 0.0024
6 ENSG00000252707 RNU11-2P RNA, U11 small nuclear 2, pseudogene 2.6962 0.0000
7 ENSG00000206908 RNU1-136P RNA, U1 small nuclear 136, pseudogene 2.6739 0.0000
8 ENSG00000215274 GAGE10 G antigen 10 2.6499 0.0000
9 ENSG00000177186 OR2M7 olfactory receptor family 2 subfamily M member 7 2.5850 0.0065
10 ENSG00000223683 RPSAP65 ribosomal protein SA pseudogene 65 2.5850 0.0065

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000122873 CISD1 CDGSH iron sulfur domain 1 -1.7277 0.0000
63127 ENSG00000201939 RNA5SP224 RNA, 5S ribosomal pseudogene 224 -1.7271 0.0000
63126 ENSG00000101940 WDR13 WD repeat domain 13 -1.7270 0.0000
63125 ENSG00000206417 H1-10-AS1 H1-10 antisense RNA 1 -1.7266 0.0000
63124 ENSG00000159387 IRX6 iroquois homeobox 6 -1.7263 0.0000
63123 ENSG00000234161 PABPC5-AS1 PABPC5 antisense RNA 1 -1.7259 0.0000
63122 ENSG00000178412 novel transcript -1.7248 0.0000
63121 ENSG00000143013 LMO4 LIM domain only 4 -1.7247 0.0000
63120 ENSG00000231784 DBIL5P diazepam binding inhibitor-like 5, pseudogene -1.7247 0.0000
63119 ENSG00000278647 CDK2AP2P1 cyclin dependent kinase 2 associated protein 2 pseudogene 1 -1.7247 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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