Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481657
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481657
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP074598
SRP074598_M130
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Sperm
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000207763
MIR617
microRNA 617
2.9183
0.0000
2
ENSG00000183891
TTC32
tetratricopeptide repeat domain 32
2.8074
0.0024
3
ENSG00000232385
RPS3AP25
RPS3A pseudogene 25
2.8074
0.0024
4
ENSG00000271070
GMCL1P2
GMCL1 pseudogene 2
2.8074
0.0000
5
ENSG00000271991
TTC32-DT
TTC32 divergent transcript
2.8074
0.0024
6
ENSG00000252707
RNU11-2P
RNA, U11 small nuclear 2, pseudogene
2.6962
0.0000
7
ENSG00000206908
RNU1-136P
RNA, U1 small nuclear 136, pseudogene
2.6739
0.0000
8
ENSG00000215274
GAGE10
G antigen 10
2.6499
0.0000
9
ENSG00000177186
OR2M7
olfactory receptor family 2 subfamily M member 7
2.5850
0.0065
10
ENSG00000223683
RPSAP65
ribosomal protein SA pseudogene 65
2.5850
0.0065
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000122873
CISD1
CDGSH iron sulfur domain 1
-1.7277
0.0000
63127
ENSG00000201939
RNA5SP224
RNA, 5S ribosomal pseudogene 224
-1.7271
0.0000
63126
ENSG00000101940
WDR13
WD repeat domain 13
-1.7270
0.0000
63125
ENSG00000206417
H1-10-AS1
H1-10 antisense RNA 1
-1.7266
0.0000
63124
ENSG00000159387
IRX6
iroquois homeobox 6
-1.7263
0.0000
63123
ENSG00000234161
PABPC5-AS1
PABPC5 antisense RNA 1
-1.7259
0.0000
63122
ENSG00000178412
novel transcript
-1.7248
0.0000
63121
ENSG00000143013
LMO4
LIM domain only 4
-1.7247
0.0000
63120
ENSG00000231784
DBIL5P
diazepam binding inhibitor-like 5, pseudogene
-1.7247
0.0000
63119
ENSG00000278647
CDK2AP2P1
cyclin dependent kinase 2 associated protein 2 pseudogene 1
-1.7247
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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