Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481657

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481657 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP074598	SRP074598_M130	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Sperm	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000207763	MIR617	microRNA 617	2.9183	0.0000
2	ENSG00000183891	TTC32	tetratricopeptide repeat domain 32	2.8074	0.0024
3	ENSG00000232385	RPS3AP25	RPS3A pseudogene 25	2.8074	0.0024
4	ENSG00000271070	GMCL1P2	GMCL1 pseudogene 2	2.8074	0.0000
5	ENSG00000271991	TTC32-DT	TTC32 divergent transcript	2.8074	0.0024
6	ENSG00000252707	RNU11-2P	RNA, U11 small nuclear 2, pseudogene	2.6962	0.0000
7	ENSG00000206908	RNU1-136P	RNA, U1 small nuclear 136, pseudogene	2.6739	0.0000
8	ENSG00000215274	GAGE10	G antigen 10	2.6499	0.0000
9	ENSG00000177186	OR2M7	olfactory receptor family 2 subfamily M member 7	2.5850	0.0065
10	ENSG00000223683	RPSAP65	ribosomal protein SA pseudogene 65	2.5850	0.0065

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000122873	CISD1	CDGSH iron sulfur domain 1	-1.7277	0.0000
63127	ENSG00000201939	RNA5SP224	RNA, 5S ribosomal pseudogene 224	-1.7271	0.0000
63126	ENSG00000101940	WDR13	WD repeat domain 13	-1.7270	0.0000
63125	ENSG00000206417	H1-10-AS1	H1-10 antisense RNA 1	-1.7266	0.0000
63124	ENSG00000159387	IRX6	iroquois homeobox 6	-1.7263	0.0000
63123	ENSG00000234161	PABPC5-AS1	PABPC5 antisense RNA 1	-1.7259	0.0000
63122	ENSG00000178412		novel transcript	-1.7248	0.0000
63121	ENSG00000143013	LMO4	LIM domain only 4	-1.7247	0.0000
63120	ENSG00000231784	DBIL5P	diazepam binding inhibitor-like 5, pseudogene	-1.7247	0.0000
63119	ENSG00000278647	CDK2AP2P1	cyclin dependent kinase 2 associated protein 2 pseudogene 1	-1.7247	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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