SHOGoiN Cell Methylome: GSM2481657
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481657 Profile download | 5090101000001000000000-236 | Sequence Read Archive | SRP074598 | SRP074598_M130 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Sperm | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000207763 | MIR617 | microRNA 617 | 2.9183 | 0.0000 |
| 2 | ENSG00000183891 | TTC32 | tetratricopeptide repeat domain 32 | 2.8074 | 0.0024 |
| 3 | ENSG00000232385 | RPS3AP25 | ribosomal protein S3a pseudogene 25 | 2.8074 | 0.0024 |
| 4 | ENSG00000271070 | GMCL1P2 | GMCL1 pseudogene 2 | 2.8074 | 0.0000 |
| 5 | ENSG00000271991 | novel transcript | 2.8074 | 0.0024 | |
| 6 | ENSG00000252707 | RNU11-2P | RNA, U11 small nuclear 2, pseudogene | 2.6962 | 0.0000 |
| 7 | ENSG00000206908 | RNU1-136P | RNA, U1 small nuclear 136, pseudogene | 2.6739 | 0.0000 |
| 8 | ENSG00000215274 | GAGE10 | G antigen 10 | 2.6499 | 0.0000 |
| 9 | ENSG00000177186 | OR2M7 | olfactory receptor family 2 subfamily M member 7 | 2.5850 | 0.0065 |
| 10 | ENSG00000223683 | RPSAP65 | ribosomal protein SA pseudogene 65 | 2.5850 | 0.0065 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000206741 | NA | -1.8431 | 0.0000 | |
| 63340 | ENSG00000214870 | novel transcript | -1.8421 | 0.0000 | |
| 63339 | ENSG00000197472 | ZNF695 | zinc finger protein 695 | -1.8420 | 0.0000 |
| 63338 | ENSG00000186665 | C17orf58 | chromosome 17 open reading frame 58 | -1.8414 | 0.0000 |
| 63337 | ENSG00000197568 | HHLA3 | HERV-H LTR-associating 3 | -1.8409 | 0.0000 |
| 63336 | ENSG00000243147 | MRPL33 | mitochondrial ribosomal protein L33 | -1.8387 | 0.0000 |
| 63335 | ENSG00000185019 | UBOX5 | U-box domain containing 5 | -1.8385 | 0.0000 |
| 63334 | ENSG00000271810 | novel protein, PPM1J-RHOC readthrough | -1.8376 | 0.0000 | |
| 63333 | ENSG00000283461 | MIR550B2 | microRNA 550b-2 | -1.8368 | 0.0000 |
| 63332 | ENSG00000207573 | MIR550A2 | microRNA 550a-2 | -1.8368 | 0.0000 |
