Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481658

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481658


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M131Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000228941 UBE3AP2 ubiquitin protein ligase E3A pseudogene 2 3.0000 0.0000
2 ENSG00000236167 GAPDHP57 glyceraldehyde 3 phosphate dehydrogenase pseudogene 57 2.8911 0.0000
3 ENSG00000207293 Y RNA 2.8333 0.0000
4 ENSG00000239344 ribosomal protein S6 (RPS6) pseudogene 2.8331 0.0000
5 ENSG00000270457 novel transcript 2.8271 0.0000
6 ENSG00000133742 CA1 carbonic anhydrase 1 2.8074 0.0023
7 ENSG00000164188 RANBP3L RAN binding protein 3 like 2.8074 0.0023
8 ENSG00000201752 RNU6-119P RNA, U6 small nuclear 119, pseudogene 2.8074 0.0023
9 ENSG00000255521 novel transcript 2.8074 0.0023
10 ENSG00000276564 novel transcript 2.8074 0.0023

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000282935 DUX4L34 double homeobox 4 like 34 (pseudogene) -1.8229 0.0000
63127 ENSG00000183604 SMG1P5 SMG1 pseudogene 5 -1.8213 0.0000
63126 ENSG00000267656 mRNA turnover 4 homolog (S. cerevisiae) (MRTO4) pseudogene -1.8209 0.0000
63125 ENSG00000170925 TEX13B testis expressed 13B -1.8206 0.0000
63124 ENSG00000243749 TMEM35B transmembrane protein 35B -1.8206 0.0000
63123 ENSG00000162971 TYW5 tRNA-yW synthesizing protein 5 -1.8205 0.0000
63122 ENSG00000277269 NA -1.8204 0.0000
63121 ENSG00000267195 MIR212 microRNA 212 -1.8204 0.0000
63120 ENSG00000282816 novel transcript, antisense to NEFH -1.8201 0.0000
63119 ENSG00000228412 LNC-LBCS lncRNA bladder and prostate cancer suppressor, hnRNPK interacting -1.8194 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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