SHOGoiN Cell Methylome: GSM2481658
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481658 Profile download | 5090101000001000000000-236 | Sequence Read Archive | SRP074598 | SRP074598_M131 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Sperm | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000228941 | UBE3AP2 | ubiquitin protein ligase E3A pseudogene 2 | 3.0000 | 0.0000 |
| 2 | ENSG00000236167 | GAPDHP57 | glyceraldehyde 3 phosphate dehydrogenase pseudogene 57 | 2.8911 | 0.0000 |
| 3 | ENSG00000207293 | NA | 2.8333 | 0.0000 | |
| 4 | ENSG00000239344 | ribosomal protein S6 (RPS6) pseudogene | 2.8331 | 0.0000 | |
| 5 | ENSG00000270457 | novel transcript | 2.8271 | 0.0000 | |
| 6 | ENSG00000133742 | CA1 | carbonic anhydrase 1 | 2.8074 | 0.0023 |
| 7 | ENSG00000164188 | RANBP3L | RAN binding protein 3 like | 2.8074 | 0.0023 |
| 8 | ENSG00000201752 | RNU6-119P | RNA, U6 small nuclear 119, pseudogene | 2.8074 | 0.0023 |
| 9 | ENSG00000255521 | novel transcript | 2.8074 | 0.0023 | |
| 10 | ENSG00000276564 | novel transcript | 2.8074 | 0.0023 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000280331 | TEC | -1.9353 | 0.0000 | |
| 63340 | ENSG00000241870 | ribosomal protein L13 (RPL13) pseudogene | -1.9349 | 0.0000 | |
| 63339 | ENSG00000222552 | RNA5SP60 | RNA, 5S ribosomal pseudogene 60 | -1.9343 | 0.0000 |
| 63338 | ENSG00000225981 | novel transcript | -1.9323 | 0.0000 | |
| 63337 | ENSG00000170185 | USP38 | ubiquitin specific peptidase 38 | -1.9319 | 0.0000 |
| 63336 | ENSG00000263307 | novel transcript, antisense to GSPT1 | -1.9317 | 0.0000 | |
| 63335 | ENSG00000254862 | novel transcript | -1.9295 | 0.0000 | |
| 63334 | ENSG00000245849 | RAD51-AS1 | RAD51 antisense RNA 1 | -1.9293 | 0.0000 |
| 63333 | ENSG00000051180 | RAD51 | RAD51 recombinase | -1.9293 | 0.0000 |
| 63332 | ENSG00000185742 | C11orf87 | chromosome 11 open reading frame 87 | -1.9288 | 0.0054 |
