SHOGoiN Cell Methylome: GSM2481658

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481658


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M131Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000228941 UBE3AP2 ubiquitin protein ligase E3A pseudogene 2 3.0000 0.0000
2 ENSG00000236167 GAPDHP57 glyceraldehyde 3 phosphate dehydrogenase pseudogene 57 2.8911 0.0000
3 ENSG00000207293 NA 2.8333 0.0000
4 ENSG00000239344 ribosomal protein S6 (RPS6) pseudogene 2.8331 0.0000
5 ENSG00000270457 novel transcript 2.8271 0.0000
6 ENSG00000133742 CA1 carbonic anhydrase 1 2.8074 0.0023
7 ENSG00000164188 RANBP3L RAN binding protein 3 like 2.8074 0.0023
8 ENSG00000201752 RNU6-119P RNA, U6 small nuclear 119, pseudogene 2.8074 0.0023
9 ENSG00000255521 novel transcript 2.8074 0.0023
10 ENSG00000276564 novel transcript 2.8074 0.0023

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000280331 TEC -1.9353 0.0000
63340 ENSG00000241870 ribosomal protein L13 (RPL13) pseudogene -1.9349 0.0000
63339 ENSG00000222552 RNA5SP60 RNA, 5S ribosomal pseudogene 60 -1.9343 0.0000
63338 ENSG00000225981 novel transcript -1.9323 0.0000
63337 ENSG00000170185 USP38 ubiquitin specific peptidase 38 -1.9319 0.0000
63336 ENSG00000263307 novel transcript, antisense to GSPT1 -1.9317 0.0000
63335 ENSG00000254862 novel transcript -1.9295 0.0000
63334 ENSG00000245849 RAD51-AS1 RAD51 antisense RNA 1 -1.9293 0.0000
63333 ENSG00000051180 RAD51 RAD51 recombinase -1.9293 0.0000
63332 ENSG00000185742 C11orf87 chromosome 11 open reading frame 87 -1.9288 0.0054

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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