Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481658

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481658 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP074598	SRP074598_M131	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Sperm	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000228941	UBE3AP2	ubiquitin protein ligase E3A pseudogene 2	3.0000	0.0000
2	ENSG00000236167	GAPDHP57	glyceraldehyde 3 phosphate dehydrogenase pseudogene 57	2.8911	0.0000
3	ENSG00000207293		Y RNA	2.8333	0.0000
4	ENSG00000239344		ribosomal protein S6 (RPS6) pseudogene	2.8331	0.0000
5	ENSG00000270457		novel transcript	2.8271	0.0000
6	ENSG00000133742	CA1	carbonic anhydrase 1	2.8074	0.0023
7	ENSG00000164188	RANBP3L	RAN binding protein 3 like	2.8074	0.0023
8	ENSG00000201752	RNU6-119P	RNA, U6 small nuclear 119, pseudogene	2.8074	0.0023
9	ENSG00000255521		novel transcript	2.8074	0.0023
10	ENSG00000276564		novel transcript	2.8074	0.0023

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000282935	DUX4L34	double homeobox 4 like 34 (pseudogene)	-1.8229	0.0000
63127	ENSG00000183604	SMG1P5	SMG1 pseudogene 5	-1.8213	0.0000
63126	ENSG00000267656		mRNA turnover 4 homolog (S. cerevisiae) (MRTO4) pseudogene	-1.8209	0.0000
63125	ENSG00000170925	TEX13B	testis expressed 13B	-1.8206	0.0000
63124	ENSG00000243749	TMEM35B	transmembrane protein 35B	-1.8206	0.0000
63123	ENSG00000162971	TYW5	tRNA-yW synthesizing protein 5	-1.8205	0.0000
63122	ENSG00000277269		NA	-1.8204	0.0000
63121	ENSG00000267195	MIR212	microRNA 212	-1.8204	0.0000
63120	ENSG00000282816		novel transcript, antisense to NEFH	-1.8201	0.0000
63119	ENSG00000228412	LNC-LBCS	lncRNA bladder and prostate cancer suppressor, hnRNPK interacting	-1.8194	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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