Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2481658
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481658
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP074598
SRP074598_M131
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Sperm
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000228941
UBE3AP2
ubiquitin protein ligase E3A pseudogene 2
3.0000
0.0000
2
ENSG00000236167
GAPDHP57
glyceraldehyde 3 phosphate dehydrogenase pseudogene 57
2.8911
0.0000
3
ENSG00000207293
Y RNA
2.8333
0.0000
4
ENSG00000239344
ribosomal protein S6 (RPS6) pseudogene
2.8331
0.0000
5
ENSG00000270457
novel transcript
2.8271
0.0000
6
ENSG00000133742
CA1
carbonic anhydrase 1
2.8074
0.0023
7
ENSG00000164188
RANBP3L
RAN binding protein 3 like
2.8074
0.0023
8
ENSG00000201752
RNU6-119P
RNA, U6 small nuclear 119, pseudogene
2.8074
0.0023
9
ENSG00000255521
novel transcript
2.8074
0.0023
10
ENSG00000276564
novel transcript
2.8074
0.0023
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000282935
DUX4L34
double homeobox 4 like 34 (pseudogene)
-1.8229
0.0000
63127
ENSG00000183604
SMG1P5
SMG1 pseudogene 5
-1.8213
0.0000
63126
ENSG00000267656
mRNA turnover 4 homolog (S. cerevisiae) (MRTO4) pseudogene
-1.8209
0.0000
63125
ENSG00000170925
TEX13B
testis expressed 13B
-1.8206
0.0000
63124
ENSG00000243749
TMEM35B
transmembrane protein 35B
-1.8206
0.0000
63123
ENSG00000162971
TYW5
tRNA-yW synthesizing protein 5
-1.8205
0.0000
63122
ENSG00000277269
NA
-1.8204
0.0000
63121
ENSG00000267195
MIR212
microRNA 212
-1.8204
0.0000
63120
ENSG00000282816
novel transcript, antisense to NEFH
-1.8201
0.0000
63119
ENSG00000228412
LNC-LBCS
lncRNA bladder and prostate cancer suppressor, hnRNPK interacting
-1.8194
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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