Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481659

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481659


Profile download
5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M132Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231822 SMC3P1 SMC3 pseudogene 1 3.1699 0.0002
2 ENSG00000253440 IGHV3-33-2 immunoglobulin heavy variable 3-33-2 (pseudogene) 2.8074 0.0018
3 ENSG00000280033 TEC 2.8074 0.0018
4 ENSG00000224626 novel transcript 2.7925 0.0000
5 ENSG00000258783 KRT18P6 keratin 18 pseudogene 6 2.6698 0.0000
6 ENSG00000172673 THEMIS thymocyte selection associated 2.5850 0.0000
7 ENSG00000202150 RNU6-407P RNA, U6 small nuclear 407, pseudogene 2.5850 0.0000
8 ENSG00000227717 golgin subfamily A member 6-like pseudogene 2.5850 0.0000
9 ENSG00000251220 RFPL4AP3 ret finger protein like 4A pseudogene 3 2.5850 0.0051
10 ENSG00000252138 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000272047 GTF2H5 general transcription factor IIH subunit 5 -1.8678 0.0000
63127 ENSG00000165478 HEPACAM hepatic and glial cell adhesion molecule -1.8678 0.0000
63126 ENSG00000259426 novel transcript, antisense to PAQR5 -1.8677 0.0000
63125 ENSG00000268120 novel transcript -1.8677 0.0000
63124 ENSG00000265559 RN7SL652P RNA, 7SL, cytoplasmic 652, pseudogene -1.8671 0.0000
63123 ENSG00000177485 ZBTB33 zinc finger and BTB domain containing 33 -1.8668 0.0000
63122 ENSG00000164976 MYORG myogenesis regulating glycosidase (putative) -1.8662 0.0000
63121 ENSG00000233654 novel transcript -1.8661 0.0000
63120 ENSG00000170837 GPR27 G protein-coupled receptor 27 -1.8660 0.0000
63119 ENSG00000200370 RNA5S17 RNA, 5S ribosomal 17 -1.8655 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...