SHOGoiN Cell Methylome: GSM2481659

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481659


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M132Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231822 structural maintenance of chromosomes 3 (SMC3) pseudogene 3.1699 0.0002
2 ENSG00000253440 IGHV3-33-2 immunoglobulin heavy variable 3-33-2 (pseudogene) 2.8074 0.0018
3 ENSG00000280033 TEC 2.8074 0.0018
4 ENSG00000224626 novel transcript 2.7925 0.0000
5 ENSG00000258783 KRT18P6 keratin 18 pseudogene 6 2.6698 0.0000
6 ENSG00000172673 THEMIS thymocyte selection associated 2.5850 0.0000
7 ENSG00000202150 RNU6-407P RNA, U6 small nuclear 407, pseudogene 2.5850 0.0000
8 ENSG00000227717 golgin subfamily A member 6-like protein 22 2.5850 0.0000
9 ENSG00000251220 RFPL4AP3 ret finger protein like 4A pseudogene 3 2.5850 0.0051
10 ENSG00000252138 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274760 NA -1.9677 0.0000
63340 ENSG00000259721 novel transcript -1.9664 0.0000
63339 ENSG00000259410 novel transcript -1.9664 0.0000
63338 ENSG00000201966 RNA5-8SP4 RNA, 5.8S ribosomal pseudogene 4 -1.9660 0.0000
63337 ENSG00000284536 MIR17 microRNA 17 -1.9660 0.0000
63336 ENSG00000284375 MIR19B1 microRNA 19b-1 -1.9660 0.0000
63335 ENSG00000284204 MIR19A microRNA 19a -1.9660 0.0000
63334 ENSG00000283815 MIR18A microRNA 18a -1.9660 0.0000
63333 ENSG00000283762 MIR20A microRNA 20a -1.9660 0.0000
63332 ENSG00000283705 MIR92A1 microRNA 92a-1 -1.9660 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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