Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481660

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481660


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M133Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279485 TEC 3.0482 0.0000
2 ENSG00000125352 RNF113A ring finger protein 113A 2.8074 0.0022
3 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.8074 0.0022
4 ENSG00000199001 MIR448 microRNA 448 2.8074 0.0022
5 ENSG00000231857 MORF4L1P5 mortality factor 4 like 1 pseudogene 5 2.8074 0.0022
6 ENSG00000257315 ZBED6 zinc finger BED-type containing 6 2.8074 0.0022
7 ENSG00000264592 RN7SL131P RNA, 7SL, cytoplasmic 131, pseudogene 2.8074 0.0000
8 ENSG00000254884 PRR13P2 proline rich 13 pseudogene 2 2.7525 0.0000
9 ENSG00000250407 novel transcript, antisense to PPP2R2B 2.7500 0.0000
10 ENSG00000242991 RPL7P40 ribosomal protein L7 pseudogene 40 2.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000152439 ZNF773 zinc finger protein 773 -1.8257 0.0000
63172 ENSG00000244501 RN7SL623P RNA, 7SL, cytoplasmic 623, pseudogene -1.8256 0.0000
63171 ENSG00000110934 BIN2 bridging integrator 2 -1.8242 0.0000
63170 ENSG00000177606 JUN Jun proto-oncogene, AP-1 transcription factor subunit -1.8241 0.0000
63169 ENSG00000224830 OR2X1P olfactory receptor family 2 subfamily X member 1 pseudogene -1.8236 0.0000
63168 ENSG00000225764 P3H2-AS1 P3H2 antisense RNA 1 -1.8212 0.0000
63167 ENSG00000206669 Y RNA -1.8191 0.0000
63166 ENSG00000224424 PRKAR2A-AS1 PRKAR2A antisense RNA 1 -1.8187 0.0000
63165 ENSG00000240093 novel transcript -1.8183 0.0000
63164 ENSG00000107262 BAG1 BAG cochaperone 1 -1.8174 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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