Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2481660
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481660
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP074598
SRP074598_M133
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Sperm
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000279485
TEC
3.0482
0.0000
2
ENSG00000125352
RNF113A
ring finger protein 113A
2.8074
0.0022
3
ENSG00000125356
NDUFA1
NADH:ubiquinone oxidoreductase subunit A1
2.8074
0.0022
4
ENSG00000199001
MIR448
microRNA 448
2.8074
0.0022
5
ENSG00000231857
MORF4L1P5
mortality factor 4 like 1 pseudogene 5
2.8074
0.0022
6
ENSG00000257315
ZBED6
zinc finger BED-type containing 6
2.8074
0.0022
7
ENSG00000264592
RN7SL131P
RNA, 7SL, cytoplasmic 131, pseudogene
2.8074
0.0000
8
ENSG00000254884
PRR13P2
proline rich 13 pseudogene 2
2.7525
0.0000
9
ENSG00000250407
novel transcript, antisense to PPP2R2B
2.7500
0.0000
10
ENSG00000242991
RPL7P40
ribosomal protein L7 pseudogene 40
2.6962
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000152439
ZNF773
zinc finger protein 773
-1.8257
0.0000
63172
ENSG00000244501
RN7SL623P
RNA, 7SL, cytoplasmic 623, pseudogene
-1.8256
0.0000
63171
ENSG00000110934
BIN2
bridging integrator 2
-1.8242
0.0000
63170
ENSG00000177606
JUN
Jun proto-oncogene, AP-1 transcription factor subunit
-1.8241
0.0000
63169
ENSG00000224830
OR2X1P
olfactory receptor family 2 subfamily X member 1 pseudogene
-1.8236
0.0000
63168
ENSG00000225764
P3H2-AS1
P3H2 antisense RNA 1
-1.8212
0.0000
63167
ENSG00000206669
Y RNA
-1.8191
0.0000
63166
ENSG00000224424
PRKAR2A-AS1
PRKAR2A antisense RNA 1
-1.8187
0.0000
63165
ENSG00000240093
novel transcript
-1.8183
0.0000
63164
ENSG00000107262
BAG1
BAG cochaperone 1
-1.8174
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...