SHOGoiN Cell Methylome: GSM2481660

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481660


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M133Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279485 TEC 3.0482 0.0000
2 ENSG00000125352 RNF113A ring finger protein 113A 2.8074 0.0022
3 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.8074 0.0022
4 ENSG00000199001 MIR448 microRNA 448 2.8074 0.0022
5 ENSG00000231857 MORF4L1P5 mortality factor 4 like 1 pseudogene 5 2.8074 0.0022
6 ENSG00000257315 ZBED6 zinc finger BED-type containing 6 2.8074 0.0022
7 ENSG00000264592 RN7SL131P RNA, 7SL, cytoplasmic 131, pseudogene 2.8074 0.0000
8 ENSG00000254884 PRR13P2 proline rich 13 pseudogene 2 2.7525 0.0000
9 ENSG00000250407 novel transcript, antisense to PPP2R2B 2.7500 0.0000
10 ENSG00000242991 RPL7P40 ribosomal protein L7 pseudogene 40 2.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000168748 CA7 carbonic anhydrase 7 -1.9177 0.0000
63340 ENSG00000148175 STOM stomatin -1.9176 0.0000
63339 ENSG00000164002 EXO5 exonuclease 5 -1.9174 0.0000
63338 ENSG00000226757 novel transcript, antisense to TMEM155 -1.9170 0.0004
63337 ENSG00000234279 LINC01937 long intergenic non-protein coding RNA 1937 -1.9167 0.0000
63336 ENSG00000065911 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase -1.9164 0.0000
63335 ENSG00000213763 ACTBP2 ACTB pseudogene 2 -1.9157 0.0000
63334 ENSG00000226191 CLK3P2 CDC like kinase 3 pseudogene 2 -1.9156 0.0000
63333 ENSG00000246350 novel transcript -1.9148 0.0000
63332 ENSG00000232917 HSPE1P6 heat shock protein family E (Hsp10) member 1 pseudogene 6 -1.9131 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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