Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481660

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481660 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP074598	SRP074598_M133	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Sperm	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000279485		TEC	3.0482	0.0000
2	ENSG00000125352	RNF113A	ring finger protein 113A	2.8074	0.0022
3	ENSG00000125356	NDUFA1	NADH:ubiquinone oxidoreductase subunit A1	2.8074	0.0022
4	ENSG00000199001	MIR448	microRNA 448	2.8074	0.0022
5	ENSG00000231857	MORF4L1P5	mortality factor 4 like 1 pseudogene 5	2.8074	0.0022
6	ENSG00000257315	ZBED6	zinc finger BED-type containing 6	2.8074	0.0022
7	ENSG00000264592	RN7SL131P	RNA, 7SL, cytoplasmic 131, pseudogene	2.8074	0.0000
8	ENSG00000254884	PRR13P2	proline rich 13 pseudogene 2	2.7525	0.0000
9	ENSG00000250407		novel transcript, antisense to PPP2R2B	2.7500	0.0000
10	ENSG00000242991	RPL7P40	ribosomal protein L7 pseudogene 40	2.6962	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000253485	PCDHGA5	protocadherin gamma subfamily A, 5	-1.8526	0.0000
63220	ENSG00000283977		novel transcript	-1.8523	0.0000
63219	ENSG00000132286	TIMM10B	translocase of inner mitochondrial membrane 10B	-1.8523	0.0000
63218	ENSG00000132254	ARFIP2	ADP ribosylation factor interacting protein 2	-1.8523	0.0000
63217	ENSG00000234646		novel transcript, sense overlapping SSTR4	-1.8506	0.0000
63216	ENSG00000224573		pseudogene similar to part of ribosomal protein L7a (RPL7A)	-1.8503	0.0000
63215	ENSG00000240006	LINC02004	long intergenic non-protein coding RNA 2004	-1.8492	0.0000
63214	ENSG00000170469	SPATA24	spermatogenesis associated 24	-1.8488	0.0000
63213	ENSG00000137275	RIPK1	receptor interacting serine/threonine kinase 1	-1.8486	0.0000
63212	ENSG00000188784	PLA2G2E	phospholipase A2 group IIE	-1.8477	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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