SHOGoiN Cell Methylome: GSM2481660
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481660 Profile download | 5090101000001000000000-236 | Sequence Read Archive | SRP074598 | SRP074598_M133 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Sperm | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000279485 | TEC | 3.0482 | 0.0000 | |
| 2 | ENSG00000125352 | RNF113A | ring finger protein 113A | 2.8074 | 0.0022 |
| 3 | ENSG00000125356 | NDUFA1 | NADH:ubiquinone oxidoreductase subunit A1 | 2.8074 | 0.0022 |
| 4 | ENSG00000199001 | MIR448 | microRNA 448 | 2.8074 | 0.0022 |
| 5 | ENSG00000231857 | MORF4L1P5 | mortality factor 4 like 1 pseudogene 5 | 2.8074 | 0.0022 |
| 6 | ENSG00000257315 | ZBED6 | zinc finger BED-type containing 6 | 2.8074 | 0.0022 |
| 7 | ENSG00000264592 | RN7SL131P | RNA, 7SL, cytoplasmic 131, pseudogene | 2.8074 | 0.0000 |
| 8 | ENSG00000254884 | PRR13P2 | proline rich 13 pseudogene 2 | 2.7525 | 0.0000 |
| 9 | ENSG00000250407 | novel transcript, antisense to PPP2R2B | 2.7500 | 0.0000 | |
| 10 | ENSG00000242991 | RPL7P40 | ribosomal protein L7 pseudogene 40 | 2.6962 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000168748 | CA7 | carbonic anhydrase 7 | -1.9177 | 0.0000 |
| 63340 | ENSG00000148175 | STOM | stomatin | -1.9176 | 0.0000 |
| 63339 | ENSG00000164002 | EXO5 | exonuclease 5 | -1.9174 | 0.0000 |
| 63338 | ENSG00000226757 | novel transcript, antisense to TMEM155 | -1.9170 | 0.0004 | |
| 63337 | ENSG00000234279 | LINC01937 | long intergenic non-protein coding RNA 1937 | -1.9167 | 0.0000 |
| 63336 | ENSG00000065911 | MTHFD2 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase | -1.9164 | 0.0000 |
| 63335 | ENSG00000213763 | ACTBP2 | ACTB pseudogene 2 | -1.9157 | 0.0000 |
| 63334 | ENSG00000226191 | CLK3P2 | CDC like kinase 3 pseudogene 2 | -1.9156 | 0.0000 |
| 63333 | ENSG00000246350 | novel transcript | -1.9148 | 0.0000 | |
| 63332 | ENSG00000232917 | HSPE1P6 | heat shock protein family E (Hsp10) member 1 pseudogene 6 | -1.9131 | 0.0000 |
