Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481660

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481660 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP074598	SRP074598_M133	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Sperm	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000279485		TEC	3.0482	0.0000
2	ENSG00000125352	RNF113A	ring finger protein 113A	2.8074	0.0022
3	ENSG00000125356	NDUFA1	NADH:ubiquinone oxidoreductase subunit A1	2.8074	0.0022
4	ENSG00000199001	MIR448	microRNA 448	2.8074	0.0022
5	ENSG00000231857	MORF4L1P5	mortality factor 4 like 1 pseudogene 5	2.8074	0.0022
6	ENSG00000257315	ZBED6	zinc finger BED-type containing 6	2.8074	0.0022
7	ENSG00000264592	RN7SL131P	RNA, 7SL, cytoplasmic 131, pseudogene	2.8074	0.0000
8	ENSG00000254884	PRR13P2	proline rich 13 pseudogene 2	2.7525	0.0000
9	ENSG00000250407		novel transcript, antisense to PPP2R2B	2.7500	0.0000
10	ENSG00000242991	RPL7P40	ribosomal protein L7 pseudogene 40	2.6962	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000152439	ZNF773	zinc finger protein 773	-1.8257	0.0000
63172	ENSG00000244501	RN7SL623P	RNA, 7SL, cytoplasmic 623, pseudogene	-1.8256	0.0000
63171	ENSG00000110934	BIN2	bridging integrator 2	-1.8242	0.0000
63170	ENSG00000177606	JUN	Jun proto-oncogene, AP-1 transcription factor subunit	-1.8241	0.0000
63169	ENSG00000224830	OR2X1P	olfactory receptor family 2 subfamily X member 1 pseudogene	-1.8236	0.0000
63168	ENSG00000225764	P3H2-AS1	P3H2 antisense RNA 1	-1.8212	0.0000
63167	ENSG00000206669		Y RNA	-1.8191	0.0000
63166	ENSG00000224424	PRKAR2A-AS1	PRKAR2A antisense RNA 1	-1.8187	0.0000
63165	ENSG00000240093		novel transcript	-1.8183	0.0000
63164	ENSG00000107262	BAG1	BAG cochaperone 1	-1.8174	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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