Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481660

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481660


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M133Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279485 TEC 3.0482 0.0000
2 ENSG00000125352 RNF113A ring finger protein 113A 2.8074 0.0022
3 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 2.8074 0.0022
4 ENSG00000199001 MIR448 microRNA 448 2.8074 0.0022
5 ENSG00000231857 MORF4L1P5 mortality factor 4 like 1 pseudogene 5 2.8074 0.0022
6 ENSG00000257315 ZBED6 zinc finger BED-type containing 6 2.8074 0.0022
7 ENSG00000264592 RN7SL131P RNA, 7SL, cytoplasmic 131, pseudogene 2.8074 0.0000
8 ENSG00000254884 PRR13P2 proline rich 13 pseudogene 2 2.7525 0.0000
9 ENSG00000250407 novel transcript, antisense to PPP2R2B 2.7500 0.0000
10 ENSG00000242991 RPL7P40 ribosomal protein L7 pseudogene 40 2.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000253485 PCDHGA5 protocadherin gamma subfamily A, 5 -1.8526 0.0000
63220 ENSG00000283977 novel transcript -1.8523 0.0000
63219 ENSG00000132286 TIMM10B translocase of inner mitochondrial membrane 10B -1.8523 0.0000
63218 ENSG00000132254 ARFIP2 ADP ribosylation factor interacting protein 2 -1.8523 0.0000
63217 ENSG00000234646 novel transcript, sense overlapping SSTR4 -1.8506 0.0000
63216 ENSG00000224573 pseudogene similar to part of ribosomal protein L7a (RPL7A) -1.8503 0.0000
63215 ENSG00000240006 LINC02004 long intergenic non-protein coding RNA 2004 -1.8492 0.0000
63214 ENSG00000170469 SPATA24 spermatogenesis associated 24 -1.8488 0.0000
63213 ENSG00000137275 RIPK1 receptor interacting serine/threonine kinase 1 -1.8486 0.0000
63212 ENSG00000188784 PLA2G2E phospholipase A2 group IIE -1.8477 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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