SHOGoiN Cell Methylome: GSM2481661

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481661


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M134Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230030 novel transcript 3.8074 0.0000
2 ENSG00000125352 RNF113A ring finger protein 113A 3.5850 0.0000
3 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 3.5850 0.0000
4 ENSG00000250962 chromosome 12 open reading frame 29 (C12orf29) pseudogene 3.1699 0.0002
5 ENSG00000175018 TEX36 testis expressed 36 3.0491 0.0000
6 ENSG00000227181 LINC01688 long intergenic non-protein coding RNA 1688 3.0000 0.0000
7 ENSG00000264125 novel transcript, antisense to SLC6A4 3.0000 0.0006
8 ENSG00000257198 FAM205BP family with sequence similarity 205 member B, pseudogene 2.8859 0.0000
9 ENSG00000230982 DSTNP1 DSTN pseudogene 1 2.8327 0.0000
10 ENSG00000275773 novel transcript 2.8322 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000081842 PCDHA6 protocadherin alpha 6 -2.0883 0.0000
63340 ENSG00000279472 novel transcript -2.0882 0.0000
63339 ENSG00000120322 PCDHB8 protocadherin beta 8 -2.0882 0.0000
63338 ENSG00000274568 RN7SL545P RNA, 7SL, cytoplasmic 545, pseudogene -2.0871 0.0000
63337 ENSG00000125375 DMAC2L distal membrane arm assembly complex 2 like -2.0868 0.0000
63336 ENSG00000254230 novel transcript -2.0864 0.0000
63335 ENSG00000270720 novel transcript -2.0864 0.0000
63334 ENSG00000238923 RNU7-1 RNA, U7 small nuclear 1 -2.0859 0.0000
63333 ENSG00000251621 novel transcript -2.0858 0.0000
63332 ENSG00000284015 MIR1281 microRNA 1281 -2.0850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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