Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481661

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481661


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M134Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230030 novel transcript 3.8074 0.0000
2 ENSG00000125352 RNF113A ring finger protein 113A 3.5850 0.0000
3 ENSG00000125356 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 3.5850 0.0000
4 ENSG00000250962 chromosome 12 open reading frame 29 (C12orf29) pseudogene 3.1699 0.0002
5 ENSG00000175018 TEX36 testis expressed 36 3.0491 0.0000
6 ENSG00000227181 LINC01688 long intergenic non-protein coding RNA 1688 3.0000 0.0000
7 ENSG00000264125 novel transcript, antisense to SLC6A4 3.0000 0.0006
8 ENSG00000257198 FAM205BP family with sequence similarity 205 member B, pseudogene 2.8859 0.0000
9 ENSG00000230982 DSTNP1 DSTN pseudogene 1 2.8327 0.0000
10 ENSG00000275773 novel transcript 2.8322 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000277809 NA -1.9829 0.0000
63127 ENSG00000276229 NA -1.9829 0.0000
63126 ENSG00000164985 PSIP1 PC4 and SFRS1 interacting protein 1 -1.9824 0.0000
63124 ENSG00000242137 RPL11P5 ribosomal protein L11 pseudogene 5 -1.9817 0.0000
63123 ENSG00000249158 PCDHA11 protocadherin alpha 11 -1.9814 0.0000
63122 ENSG00000202257 RNA5S16 RNA, 5S ribosomal 16 -1.9813 0.0000
63121 ENSG00000198081 ZBTB14 zinc finger and BTB domain containing 14 -1.9809 0.0000
63120 ENSG00000140367 UBE2Q2 ubiquitin conjugating enzyme E2 Q2 -1.9806 0.0000
63119 ENSG00000120837 NFYB nuclear transcription factor Y subunit beta -1.9794 0.0000
10 ENSG00000275773 novel transcript 2.8322 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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