Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481662

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481662


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M135Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223911 novel transcript 3.0566 0.0000
2 ENSG00000258034 novel transcript, antisense to MED13L 2.7518 0.0000
3 ENSG00000224711 LINC01706 long intergenic non-protein coding RNA 1706 2.6455 0.0000
4 ENSG00000229608 GOLGA2P4 GOLGA2 pseudogene 4 2.6451 0.0000
5 ENSG00000207628 MIR651 microRNA 651 2.6317 0.0000
6 ENSG00000279511 TEC 2.5850 0.0000
7 ENSG00000283532 MIR4317 microRNA 4317 2.5850 0.0061
8 ENSG00000250334 LINC00989 long intergenic non-protein coding RNA 989 2.5382 0.0000
9 ENSG00000207360 RNU6-14P RNA, U6 small nuclear 14, pseudogene 2.5018 0.0000
10 ENSG00000212276 RNA5SP292 RNA, 5S ribosomal pseudogene 292 2.4973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000162521 RBBP4 RB binding protein 4, chromatin remodeling factor -1.7725 0.0000
63127 ENSG00000168298 H1-4 H1.4 linker histone, cluster member -1.7718 0.0000
63126 ENSG00000222071 MIR1915 microRNA 1915 -1.7717 0.0000
63125 ENSG00000266782 MIR3663 microRNA 3663 -1.7716 0.0000
63124 ENSG00000272143 FGF14-AS2 FGF14 antisense RNA 2 -1.7701 0.0000
63123 ENSG00000260211 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 (HCN2) pseudogene -1.7693 0.0000
63122 ENSG00000119938 PPP1R3C protein phosphatase 1 regulatory subunit 3C -1.7693 0.0000
63121 ENSG00000275674 novel protein -1.7684 0.0000
63120 ENSG00000139974 SLC38A6 solute carrier family 38 member 6 -1.7684 0.0000
63119 ENSG00000107187 LHX3 LIM homeobox 3 -1.7684 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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