SHOGoiN Cell Methylome: GSM2481662

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481662


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M135Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223911 novel transcript 3.0566 0.0000
2 ENSG00000258034 novel transcript, antisense to MED13L 2.7518 0.0000
3 ENSG00000224711 LINC01706 long intergenic non-protein coding RNA 1706 2.6455 0.0000
4 ENSG00000229608 GOLGA2P4 GOLGA2 pseudogene 4 2.6451 0.0000
5 ENSG00000207628 MIR651 microRNA 651 2.6317 0.0000
6 ENSG00000279511 TEC 2.5850 0.0000
7 ENSG00000283532 MIR4317 microRNA 4317 2.5850 0.0061
8 ENSG00000250334 LINC00989 long intergenic non-protein coding RNA 989 2.5382 0.0000
9 ENSG00000207360 RNU6-14P RNA, U6 small nuclear 14, pseudogene 2.5018 0.0000
10 ENSG00000212276 RNA5SP292 RNA, 5S ribosomal pseudogene 292 2.4973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000261360 novel transcript, antisense to FAM105B -1.8634 0.0000
63340 ENSG00000266389 novel transcript -1.8631 0.0000
63339 ENSG00000189164 ZNF527 zinc finger protein 527 -1.8617 0.0575
63338 ENSG00000132963 POMP proteasome maturation protein -1.8612 0.0000
63337 ENSG00000150551 LYPD1 LY6/PLAUR domain containing 1 -1.8606 0.0000
63336 ENSG00000278341 novel transcript, antisense to CTU2 -1.8604 0.0000
63335 ENSG00000274164 RNA5SP439 RNA, 5S ribosomal pseudogene 439 -1.8602 0.0000
63334 ENSG00000212615 NA -1.8591 0.0000
63333 ENSG00000266677 novel transcript -1.8574 0.0000
63332 ENSG00000280362 TEC -1.8571 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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