Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481663

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481663


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M136Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230275 SERBP1P4 SERPINE1 mRNA binding protein 1 pseudogene 4 3.1699 0.0003
2 ENSG00000240519 ribosomal protein, large, P1 (RPLP1) pseudogene 3.1699 0.0003
3 ENSG00000251339 novel transcript 3.1699 0.0003
4 ENSG00000251412 novel transcript 3.1699 0.0000
6 ENSG00000217929 CICP18 capicua transcriptional repressor pseudogene 18 2.8844 0.0000
7 ENSG00000253861 SLC2A3P1 solute carrier family 2 member 3 pseudogene 1 2.8499 0.0000
8 ENSG00000222788 RNU2-38P RNA, U2 small nuclear 38, pseudogene 2.8074 0.0024
9 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.8074 0.0024
10 ENSG00000271901 novel transcript 2.8074 0.0024
63119 ENSG00000136160 EDNRB endothelin receptor type B -1.9469 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000171208 NETO2 neuropilin and tolloid like 2 -1.9528 0.0000
63127 ENSG00000135643 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 -1.9524 0.0000
63126 ENSG00000165617 DACT1 dishevelled binding antagonist of beta catenin 1 -1.9505 0.0000
63124 ENSG00000119669 IRF2BPL interferon regulatory factor 2 binding protein like -1.9497 0.0000
63123 ENSG00000224136 splicing factor, arginine/serine-rich 3 (SFRS3) pseudogene -1.9494 0.0000
63122 ENSG00000246082 NUDT16L2P nudix hydrolase 16 like 2, pseudogene -1.9492 0.0000
63121 ENSG00000267131 novel transcript, antisense to BCAS3 -1.9489 0.0000
63120 ENSG00000227492 novel transcript -1.9486 0.0000
63119 ENSG00000136160 EDNRB endothelin receptor type B -1.9469 0.0000
10 ENSG00000271901 novel transcript 2.8074 0.0024

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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