SHOGoiN Cell Methylome: GSM2481663

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481663


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M136Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230275 SERBP1P4 SERPINE1 mRNA binding protein 1 pseudogene 4 3.1699 0.0003
2 ENSG00000240519 ribosomal protein, large, P1 (RPLP1) pseudogene 3.1699 0.0003
3 ENSG00000251339 novel transcript 3.1699 0.0003
4 ENSG00000251412 novel transcript 3.1699 0.0000
6 ENSG00000217929 CICP18 capicua transcriptional repressor pseudogene 18 2.8844 0.0000
7 ENSG00000253861 SLC2A3P1 solute carrier family 2 member 3 pseudogene 1 2.8499 0.0000
8 ENSG00000222788 RNU2-38P RNA, U2 small nuclear 38, pseudogene 2.8074 0.0024
9 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.8074 0.0024
10 ENSG00000271901 novel transcript 2.8074 0.0024
63332 ENSG00000175229 GAL3ST3 galactose-3-O-sulfotransferase 3 -2.0446 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000273729 novel transcript, antisense to IRF2BPL -2.0481 0.0000
63340 ENSG00000233702 ribosomal protein L37 pseudogene -2.0480 0.0000
63339 ENSG00000197417 SHPK sedoheptulokinase -2.0458 0.0000
63338 ENSG00000010017 RANBP9 RAN binding protein 9 -2.0457 0.0000
63337 ENSG00000121743 GJA3 gap junction protein alpha 3 -2.0449 0.0000
63336 ENSG00000284332 MIR1302-2 microRNA 1302-2 -2.0449 0.0000
63335 ENSG00000243485 MIR1302-2HG MIR1302-2 host gene -2.0449 0.0000
63334 ENSG00000237613 FAM138A family with sequence similarity 138 member A -2.0449 0.0000
63333 ENSG00000227232 WASH7P WASP family homolog 7, pseudogene -2.0449 0.0000
63332 ENSG00000175229 GAL3ST3 galactose-3-O-sulfotransferase 3 -2.0446 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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