Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481664

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481664


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M137Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251149 MTND5P5 MT-ND5 pseudogene 5 3.3219 0.0000
2 ENSG00000264089 MIR3681 microRNA 3681 3.3219 0.0001
3 ENSG00000178462 TUBAL3 tubulin alpha like 3 3.1699 0.0003
4 ENSG00000197953 AADACL2 arylacetamide deacetylase like 2 3.1699 0.0003
5 ENSG00000271588 LARP7P1 LARP7 pseudogene 1 3.1699 0.0003
6 ENSG00000200974 RNU4-87P RNA, U4 small nuclear 87, pseudogene 3.0000 0.0009
7 ENSG00000212428 Small nucleolar RNA SNORD115 3.0000 0.0009
8 ENSG00000230758 SNAP23P1 synaptosome associated protein 23 pseudogene 1 3.0000 0.0000
9 ENSG00000248311 novel transcript 3.0000 0.0000
10 ENSG00000258526 novel transcript 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000259711 novel transcript -2.0104 0.0000
63127 ENSG00000158747 NBL1 NBL1, DAN family BMP antagonist -2.0089 0.0000
63126 ENSG00000096968 JAK2 Janus kinase 2 -2.0089 0.0000
63125 ENSG00000273331 TM4SF19-DYNLT2B TM4SF19-DYNLT2B readthrough (NMD candidate) -2.0084 0.0000
63124 ENSG00000212146 RNU6-910P RNA, U6 small nuclear 910, pseudogene -2.0084 0.0000
63123 ENSG00000207779 MIR15B microRNA 15b -2.0079 0.0000
63122 ENSG00000198987 MIR16-2 microRNA 16-2 -2.0079 0.0000
63121 ENSG00000197479 PCDHB11 protocadherin beta 11 -2.0074 0.0000
63120 ENSG00000140993 TIGD7 tigger transposable element derived 7 -2.0074 0.0000
63119 ENSG00000267288 novel transcript, antisense to HEXIM2 -2.0073 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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