SHOGoiN Cell Methylome: GSM2481664

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481664


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M137Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251149 MTND5P5 MT-ND5 pseudogene 5 3.3219 0.0000
2 ENSG00000264089 MIR3681 microRNA 3681 3.3219 0.0001
3 ENSG00000178462 TUBAL3 tubulin alpha like 3 3.1699 0.0003
4 ENSG00000197953 AADACL2 arylacetamide deacetylase like 2 3.1699 0.0003
5 ENSG00000271588 LARP7P1 La ribonucleoprotein domain family member 7 pseudogene 1 3.1699 0.0003
6 ENSG00000200974 RNU4-87P RNA, U4 small nuclear 87, pseudogene 3.0000 0.0009
7 ENSG00000212428 NA 3.0000 0.0009
8 ENSG00000230758 SNAP23P1 synaptosome associated protein 23 pseudogene 1 3.0000 0.0000
9 ENSG00000248311 novel transcript 3.0000 0.0000
10 ENSG00000258526 novel transcript 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000207808 MIR27A microRNA 27a -2.1356 0.0000
63340 ENSG00000257180 novel transcript -2.1346 0.0001
63339 ENSG00000243959 RN7SL684P RNA, 7SL, cytoplasmic 684, pseudogene -2.1329 0.0000
63338 ENSG00000168301 KCTD6 potassium channel tetramerization domain containing 6 -2.1324 0.0000
63337 ENSG00000164190 NIPBL NIPBL cohesin loading factor -2.1319 0.0000
63336 ENSG00000189164 ZNF527 zinc finger protein 527 -2.1304 0.0000
63335 ENSG00000125285 SOX21 SRY-box 21 -2.1304 0.0000
63334 ENSG00000272686 novel transcript, antisense to WASL -2.1289 0.0000
63333 ENSG00000106299 WASL WASP like actin nucleation promoting factor -2.1289 0.0000
63332 ENSG00000138316 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 -2.1287 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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