Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481665

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481665


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M138Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235976 H2BP8 H2B histone pseudogene 8 3.0000 0.0010
2 ENSG00000279162 tec 2.9260 0.0000
3 ENSG00000249112 novel transcript, antisense to ZNF608 2.8774 0.0000
4 ENSG00000227971 serine/arginine-rich splicing factor 10 (SRSF10) pseudogene 2.8074 0.0026
5 ENSG00000231589 novel transcript 2.8074 0.0026
6 ENSG00000243601 RPL12P24 ribosomal protein L12 pseudogene 24 2.8074 0.0026
7 ENSG00000256293 ATP6V1E1P3 ATPase H+ transporting V1 subunit E1 pseudogene 3 2.8074 0.0026
8 ENSG00000258657 novel transcript, antisense to GZMB 2.8074 0.0026
9 ENSG00000280229 TEC 2.8074 0.0000
10 ENSG00000168398 BDKRB2 bradykinin receptor B2 2.7768 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000245498 novel transcript, antisense to C11orf61 -1.7680 0.0000
63127 ENSG00000214708 novel transcript, antisense to RHOT1 -1.7678 0.0000
63126 ENSG00000075399 VPS9D1 VPS9 domain containing 1 -1.7675 0.0000
63125 ENSG00000267325 LINC01415 long intergenic non-protein coding RNA 1415 -1.7675 0.0000
63124 ENSG00000279954 novel transcript -1.7675 0.0000
63123 ENSG00000164051 CCDC51 coiled-coil domain containing 51 -1.7667 0.0000
63122 ENSG00000100625 SIX4 SIX homeobox 4 -1.7663 0.0000
63121 ENSG00000279227 novel transcript -1.7663 0.0000
63120 ENSG00000162910 MRPL55 mitochondrial ribosomal protein L55 -1.7657 0.0000
63119 ENSG00000163377 TAFA4 TAFA chemokine like family member 4 -1.7656 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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