SHOGoiN Cell Methylome: GSM2481665
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2481665 Profile download | 5090101000001000000000-236 | Sequence Read Archive | SRP074598 | SRP074598_M138 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Sperm | Human | Genitalia | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000235976 | histone H2B family pseudogene | 3.0000 | 0.0010 | |
| 2 | ENSG00000279162 | tec | 2.9260 | 0.0000 | |
| 3 | ENSG00000249112 | novel transcript, antisense to ZNF608 | 2.8774 | 0.0000 | |
| 4 | ENSG00000227971 | serine/arginine-rich splicing factor 10 (SRSF10) pseudogene | 2.8074 | 0.0026 | |
| 5 | ENSG00000231589 | novel transcript | 2.8074 | 0.0026 | |
| 6 | ENSG00000243601 | RPL12P24 | ribosomal protein L12 pseudogene 24 | 2.8074 | 0.0026 |
| 7 | ENSG00000256293 | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 (ATP6V1E1) pseudogene | 2.8074 | 0.0026 | |
| 8 | ENSG00000258657 | novel transcript, antisense to GZMB | 2.8074 | 0.0026 | |
| 9 | ENSG00000280229 | TEC | 2.8074 | 0.0000 | |
| 10 | ENSG00000168398 | BDKRB2 | bradykinin receptor B2 | 2.7768 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000171056 | SOX7 | SRY-box 7 | -1.8636 | 0.0000 |
| 63340 | ENSG00000174799 | CEP135 | centrosomal protein 135 | -1.8634 | 0.0000 |
| 63339 | ENSG00000165195 | PIGA | phosphatidylinositol glycan anchor biosynthesis class A | -1.8614 | 0.0000 |
| 63338 | ENSG00000227141 | centaurin, gamma 2 (CENTG2) pseudogene | -1.8614 | 0.0000 | |
| 63337 | ENSG00000159348 | CYB5R1 | cytochrome b5 reductase 1 | -1.8609 | 0.0000 |
| 63336 | ENSG00000161243 | F-box protein 27 | -1.8604 | 0.0000 | |
| 63335 | ENSG00000140307 | GTF2A2 | general transcription factor IIA subunit 2 | -1.8603 | 0.0000 |
| 63334 | ENSG00000230067 | HSPD1P6 | heat shock protein family D (Hsp60) member 1 pseudogene 6 | -1.8600 | 0.0000 |
| 63333 | ENSG00000177468 | OLIG3 | oligodendrocyte transcription factor 3 | -1.8599 | 0.0000 |
| 63332 | ENSG00000260778 | novel transcript | -1.8599 | 0.0000 |
