Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2481665
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2481665
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP074598
SRP074598_M138
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Sperm
Human
Genitalia
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000235976
H2BP8
H2B histone pseudogene 8
3.0000
0.0010
2
ENSG00000279162
tec
2.9260
0.0000
3
ENSG00000249112
novel transcript, antisense to ZNF608
2.8774
0.0000
4
ENSG00000227971
serine/arginine-rich splicing factor 10 (SRSF10) pseudogene
2.8074
0.0026
5
ENSG00000231589
novel transcript
2.8074
0.0026
6
ENSG00000243601
RPL12P24
ribosomal protein L12 pseudogene 24
2.8074
0.0026
7
ENSG00000256293
ATP6V1E1P3
ATPase H+ transporting V1 subunit E1 pseudogene 3
2.8074
0.0026
8
ENSG00000258657
novel transcript, antisense to GZMB
2.8074
0.0026
9
ENSG00000280229
TEC
2.8074
0.0000
10
ENSG00000168398
BDKRB2
bradykinin receptor B2
2.7768
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000245498
novel transcript, antisense to C11orf61
-1.7680
0.0000
63127
ENSG00000214708
novel transcript, antisense to RHOT1
-1.7678
0.0000
63126
ENSG00000075399
VPS9D1
VPS9 domain containing 1
-1.7675
0.0000
63125
ENSG00000267325
LINC01415
long intergenic non-protein coding RNA 1415
-1.7675
0.0000
63124
ENSG00000279954
novel transcript
-1.7675
0.0000
63123
ENSG00000164051
CCDC51
coiled-coil domain containing 51
-1.7667
0.0000
63122
ENSG00000100625
SIX4
SIX homeobox 4
-1.7663
0.0000
63121
ENSG00000279227
novel transcript
-1.7663
0.0000
63120
ENSG00000162910
MRPL55
mitochondrial ribosomal protein L55
-1.7657
0.0000
63119
ENSG00000163377
TAFA4
TAFA chemokine like family member 4
-1.7656
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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