SHOGoiN Cell Methylome: GSM2481665

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481665


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M138Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235976 histone H2B family pseudogene 3.0000 0.0010
2 ENSG00000279162 tec 2.9260 0.0000
3 ENSG00000249112 novel transcript, antisense to ZNF608 2.8774 0.0000
4 ENSG00000227971 serine/arginine-rich splicing factor 10 (SRSF10) pseudogene 2.8074 0.0026
5 ENSG00000231589 novel transcript 2.8074 0.0026
6 ENSG00000243601 RPL12P24 ribosomal protein L12 pseudogene 24 2.8074 0.0026
7 ENSG00000256293 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 (ATP6V1E1) pseudogene 2.8074 0.0026
8 ENSG00000258657 novel transcript, antisense to GZMB 2.8074 0.0026
9 ENSG00000280229 TEC 2.8074 0.0000
10 ENSG00000168398 BDKRB2 bradykinin receptor B2 2.7768 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000171056 SOX7 SRY-box 7 -1.8636 0.0000
63340 ENSG00000174799 CEP135 centrosomal protein 135 -1.8634 0.0000
63339 ENSG00000165195 PIGA phosphatidylinositol glycan anchor biosynthesis class A -1.8614 0.0000
63338 ENSG00000227141 centaurin, gamma 2 (CENTG2) pseudogene -1.8614 0.0000
63337 ENSG00000159348 CYB5R1 cytochrome b5 reductase 1 -1.8609 0.0000
63336 ENSG00000161243 F-box protein 27 -1.8604 0.0000
63335 ENSG00000140307 GTF2A2 general transcription factor IIA subunit 2 -1.8603 0.0000
63334 ENSG00000230067 HSPD1P6 heat shock protein family D (Hsp60) member 1 pseudogene 6 -1.8600 0.0000
63333 ENSG00000177468 OLIG3 oligodendrocyte transcription factor 3 -1.8599 0.0000
63332 ENSG00000260778 novel transcript -1.8599 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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