Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481665

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2481665 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP074598	SRP074598_M138	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Sperm	Human	Genitalia	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000235976	H2BP8	H2B histone pseudogene 8	3.0000	0.0010
2	ENSG00000279162		tec	2.9260	0.0000
3	ENSG00000249112		novel transcript, antisense to ZNF608	2.8774	0.0000
4	ENSG00000227971		serine/arginine-rich splicing factor 10 (SRSF10) pseudogene	2.8074	0.0026
5	ENSG00000231589		novel transcript	2.8074	0.0026
6	ENSG00000243601	RPL12P24	ribosomal protein L12 pseudogene 24	2.8074	0.0026
7	ENSG00000256293	ATP6V1E1P3	ATPase H+ transporting V1 subunit E1 pseudogene 3	2.8074	0.0026
8	ENSG00000258657		novel transcript, antisense to GZMB	2.8074	0.0026
9	ENSG00000280229		TEC	2.8074	0.0000
10	ENSG00000168398	BDKRB2	bradykinin receptor B2	2.7768	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000245498		novel transcript, antisense to C11orf61	-1.7680	0.0000
63127	ENSG00000214708		novel transcript, antisense to RHOT1	-1.7678	0.0000
63126	ENSG00000075399	VPS9D1	VPS9 domain containing 1	-1.7675	0.0000
63125	ENSG00000267325	LINC01415	long intergenic non-protein coding RNA 1415	-1.7675	0.0000
63124	ENSG00000279954		novel transcript	-1.7675	0.0000
63123	ENSG00000164051	CCDC51	coiled-coil domain containing 51	-1.7667	0.0000
63122	ENSG00000100625	SIX4	SIX homeobox 4	-1.7663	0.0000
63121	ENSG00000279227		novel transcript	-1.7663	0.0000
63120	ENSG00000162910	MRPL55	mitochondrial ribosomal protein L55	-1.7657	0.0000
63119	ENSG00000163377	TAFA4	TAFA chemokine like family member 4	-1.7656	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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