SHOGoiN Cell Methylome: GSM2481666

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481666


Profile download
5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M139Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000147697 GSDMC gasdermin C 3.2331 0.0000
2 ENSG00000231712 H3 histone, family 3A (H3F3A) pseudogene 3.2168 0.0000
3 ENSG00000213158 GAPDHP36 glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 3.1699 0.0004
4 ENSG00000251917 RNU1-86P RNA, U1 small nuclear 86, pseudogene 3.1699 0.0004
5 ENSG00000253138 LINC00967 long intergenic non-protein coding RNA 967 3.1699 0.0004
6 ENSG00000280961 TTTY3B testis-specific transcript, Y-linked 3B 3.1699 0.0004
7 ENSG00000258215 tripartite motif containing 61 (TRIM61) pseudogene 3.0986 0.0000
8 ENSG00000279635 tec 3.0889 0.0000
9 ENSG00000165841 CYP2C19 cytochrome P450 family 2 subfamily C member 19 3.0000 0.0000
10 ENSG00000239703 RN7SL568P RNA, 7SL, cytoplasmic 568, pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000237036 ZEB1-AS1 ZEB1 antisense RNA 1 -2.0577 0.0000
63340 ENSG00000213935 RPL22P16 ribosomal protein L22 pseudogene 16 -2.0566 0.0000
63339 ENSG00000136099 PCDH8 protocadherin 8 -2.0565 0.0000
63338 ENSG00000267042 novel transcript, antisense to CCR10 -2.0565 0.0000
63337 ENSG00000262624 novel transcript, antisense to TMEM102 -2.0548 0.0000
63336 ENSG00000163453 IGFBP7 insulin like growth factor binding protein 7 -2.0539 0.0000
63335 ENSG00000212165 NA -2.0531 0.0000
63334 ENSG00000253716 MINCR MYC-induced long non-coding RNA -2.0525 0.0000
63333 ENSG00000201162 RNU6-454P RNA, U6 small nuclear 454, pseudogene -2.0522 0.0000
63332 ENSG00000240225 ZNF542P zinc finger protein 542, pseudogene -2.0515 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...