Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481666

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481666


Profile download
5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M139Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000147697 GSDMC gasdermin C 3.2331 0.0000
2 ENSG00000231712 H3P5 H3 histone pseudogene 5 3.2168 0.0000
3 ENSG00000213158 GAPDHP36 glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 3.1699 0.0004
4 ENSG00000251917 RNU1-86P RNA, U1 small nuclear 86, pseudogene 3.1699 0.0004
5 ENSG00000253138 LINC00967 long intergenic non-protein coding RNA 967 3.1699 0.0004
6 ENSG00000280961 TTTY3B testis-specific transcript, Y-linked 3B 3.1699 0.0004
7 ENSG00000258215 tripartite motif containing 61 (TRIM61) pseudogene 3.0986 0.0000
8 ENSG00000279635 tec 3.0889 0.0000
9 ENSG00000165841 CYP2C19 cytochrome P450 family 2 subfamily C member 19 3.0000 0.0000
10 ENSG00000239703 RN7SL568P RNA, 7SL, cytoplasmic 568, pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000266754 RN7SL524P RNA, 7SL, cytoplasmic 524, pseudogene -1.9624 0.0000
63127 ENSG00000166851 PLK1 polo like kinase 1 -1.9623 0.0000
63126 ENSG00000171161 ZNF672 zinc finger protein 672 -1.9623 0.0000
63125 ENSG00000206168 novel pseudogene -1.9609 0.0000
63124 ENSG00000240371 RPS4XP13 ribosomal protein S4X pseudogene 13 -1.9580 0.0000
63123 ENSG00000173276 ZBTB21 zinc finger and BTB domain containing 21 -1.9570 0.0000
63122 ENSG00000259493 TFDP1P3 TFDP1 pseudogene 3 -1.9566 0.0000
63121 ENSG00000201812 RNA5SP488 RNA, 5S ribosomal pseudogene 488 -1.9564 0.0000
63120 ENSG00000179085 DPM3 dolichyl-phosphate mannosyltransferase subunit 3, regulatory -1.9562 0.0000
63119 ENSG00000196449 YRDC yrdC N6-threonylcarbamoyltransferase domain containing -1.9562 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...