SHOGoiN Cell Methylome: GSM2481667

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481667


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M140Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000256484 novel transcript 2.9037 0.0000
2 ENSG00000179083 FAM133A family with sequence similarity 133 member A 2.8074 0.0019
3 ENSG00000186310 NAP1L3 nucleosome assembly protein 1 like 3 2.8074 0.0019
4 ENSG00000199986 RNU6-486P RNA, U6 small nuclear 486, pseudogene 2.8074 0.0019
5 ENSG00000258960 ferritin, heavy polypeptide 1 (FTH1) pseudogene 2.8074 0.0019
6 ENSG00000226261 family with sequence similarity 64, member A (FAM64A) pseudogene 2.7823 0.0000
7 ENSG00000272966 novel transcript 2.7823 0.0000
8 ENSG00000270318 IGHV3OR16-11 immunoglobulin heavy variable 3/OR16-11 (pseudogene) 2.6893 0.0000
9 ENSG00000241942 RPS20P20 ribosomal protein S20 pseudogene 20 2.6786 0.0000
10 ENSG00000207136 RNU6-769P RNA, U6 small nuclear 769, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000113460 BRIX1 biogenesis of ribosomes BRX1 -1.8054 0.0000
63340 ENSG00000116350 SRSF4 serine and arginine rich splicing factor 4 -1.8053 0.0000
63339 ENSG00000230651 RGPD4-AS1 RGPD4 antisense RNA 1 (head to head) -1.8047 0.0000
63338 ENSG00000177464 GPR4 G protein-coupled receptor 4 -1.8042 0.0000
63337 ENSG00000132463 GRSF1 G-rich RNA sequence binding factor 1 -1.8034 0.0000
63336 ENSG00000262039 novel transcript, antisense to PHB -1.8027 0.0000
63335 ENSG00000170791 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 -1.8027 0.0000
63334 ENSG00000280105 TEC -1.8027 0.0000
63333 ENSG00000066735 KIF26A kinesin family member 26A -1.8019 0.0000
63332 ENSG00000283880 MIR7704 microRNA 7704 -1.8017 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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