Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481667

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481667


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5090101000001000000000-236Sequence Read ArchiveSRP074598SRP074598_M140Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeSpermHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000256484 novel transcript 2.9037 0.0000
2 ENSG00000179083 FAM133A family with sequence similarity 133 member A 2.8074 0.0019
3 ENSG00000186310 NAP1L3 nucleosome assembly protein 1 like 3 2.8074 0.0019
4 ENSG00000199986 RNU6-486P RNA, U6 small nuclear 486, pseudogene 2.8074 0.0019
5 ENSG00000258960 FTH1P13 ferritin heavy chain 1 pseudogene 13 2.8074 0.0019
6 ENSG00000226261 PIMREGP1 PIMREG pseudogene 1 2.7823 0.0000
7 ENSG00000272966 novel transcript 2.7823 0.0000
8 ENSG00000270318 IGHV3OR16-11 immunoglobulin heavy variable 3/OR16-11 (pseudogene) 2.6893 0.0000
9 ENSG00000241942 RPS20P20 ribosomal protein S20 pseudogene 20 2.6786 0.0000
10 ENSG00000207136 RNU6-769P RNA, U6 small nuclear 769, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000228343 novel transcript -1.7239 0.0000
63127 ENSG00000165379 LRFN5 leucine rich repeat and fibronectin type III domain containing 5 -1.7230 0.0000
63126 ENSG00000205089 CCNI2 cyclin I family member 2 -1.7226 0.0000
63125 ENSG00000224664 RPL36AP53 ribosomal protein L36a pseudogene 53 -1.7223 0.0000
63124 ENSG00000256747 novel transcript -1.7213 0.0000
63123 ENSG00000166848 TERF2IP TERF2 interacting protein -1.7210 0.0000
63122 ENSG00000176273 SLC35G1 solute carrier family 35 member G1 -1.7208 0.0000
63121 ENSG00000284536 MIR17 microRNA 17 -1.7208 0.0000
63120 ENSG00000284375 MIR19B1 microRNA 19b-1 -1.7208 0.0000
63119 ENSG00000284204 MIR19A microRNA 19a -1.7208 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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