Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773514

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773514


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M141Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249193 HSPD1P5 heat shock protein family D (Hsp60) member 1 pseudogene 5 3.0000 0.0000
2 ENSG00000250544 LINC02059 long intergenic non-protein coding RNA 2059 2.5850 0.0004
3 ENSG00000224326 novel transcript 2.4863 0.0000
4 ENSG00000201474 RNU6-164P RNA, U6 small nuclear 164, pseudogene 2.3219 0.0020
5 ENSG00000250372 MARK2P4 microtubule affinity regulating kinase 2 pseudogene 4 2.3219 0.0020
6 ENSG00000253571 transcriptional adaptor 1 (TADA1) pseudogene 2.3219 0.0000
7 ENSG00000254015 MTND4LP26 MT-ND4L pseudogene 26 2.3219 0.0000
8 ENSG00000257864 IQ motif containing F1 (IQCF1) pseudogene 2.1950 0.0000
9 ENSG00000252047 Y RNA 2.1016 0.0000
10 ENSG00000251852 Y RNA 2.0278 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000237593 ribosomal protein L17 (RPL17) pseudogene -1.5386 0.0080
63127 ENSG00000219867 ras homologue gene family pseudogene -1.5384 0.0005
63126 ENSG00000256747 novel transcript -1.5383 0.0000
63125 ENSG00000283576 mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene -1.5381 0.2201
63124 ENSG00000175202 HIGD2B HIG1 hypoxia inducible domain family member 2B -1.5381 0.0000
63123 ENSG00000230932 tight junction protein 3 (zona occludens 3) (TJP3) pseudogene -1.5381 0.0001
63122 ENSG00000237451 CDK2AP2P2 cyclin dependent kinase 2 associated protein 2 pseudogene 2 -1.5379 0.0000
63121 ENSG00000273026 novel transcript, antisense to SLC39A1 -1.5376 0.0000
63120 ENSG00000267477 novel protein -1.5369 0.0000
63119 ENSG00000261842 novel transcript -1.5368 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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