SHOGoiN Cell Methylome: GSM2773514

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773514


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M141Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249193 HSPD1P5 heat shock protein family D (Hsp60) member 1 pseudogene 5 3.0000 0.0000
2 ENSG00000250544 LINC02059 long intergenic non-protein coding RNA 2059 2.5850 0.0004
3 ENSG00000224326 novel transcript 2.4863 0.0000
4 ENSG00000201474 RNU6-164P RNA, U6 small nuclear 164, pseudogene 2.3219 0.0020
5 ENSG00000250372 MARK2P4 microtubule affinity regulating kinase 2 pseudogene 4 2.3219 0.0020
6 ENSG00000253571 transcriptional adaptor 1 (TADA1) pseudogene 2.3219 0.0000
7 ENSG00000254015 MTND4LP26 MT-ND4L pseudogene 26 2.3219 0.0000
8 ENSG00000257864 IQ motif containing F1 (IQCF1) pseudogene 2.1950 0.0000
9 ENSG00000252047 NA 2.1016 0.0000
10 ENSG00000251852 NA 2.0278 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000230571 novel pseudogene -1.5850 0.0203
63340 ENSG00000230292 NAALADL2-AS3 NAALADL2 antisense RNA 3 -1.5850 0.5856
63339 ENSG00000230159 novel transcript -1.5850 0.5856
63338 ENSG00000230133 LINC01721 long intergenic non-protein coding RNA 1721 -1.5850 1.0000
63337 ENSG00000229975 LIPT1P1 lipoyltransferase 1 pseudogene 1 -1.5850 1.0000
63336 ENSG00000229779 novel transcript -1.5850 0.3543
63335 ENSG00000229747 phosphatidylinositol transfer protein, cytoplasmic 1 (PITPNC1) pseudogene -1.5850 0.2173
63334 ENSG00000229311 novel transcript -1.5850 1.0000
63333 ENSG00000228611 HNF4GP1 hepatocyte nuclear factor 4 gamma pseudogene 1 -1.5850 0.2173
63332 ENSG00000228519 RAN binding protein 1 pseudogene -1.5850 0.0031

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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