Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773515

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773515 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M142	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000234152	ELOBP1	elongin B pseudogene 1	2.8074	0.0003
2	ENSG00000229871	RPSAP20	ribosomal protein SA pseudogene 20	2.5850	0.0000
3	ENSG00000254830		novel transcript	2.5850	0.0000
4	ENSG00000229937	PRPS1L1	phosphoribosyl pyrophosphate synthetase 1 like 1	2.3219	0.0040
5	ENSG00000242119		pseudogene similar to part of zinc and ring finger 1 ZNRF1	2.3219	0.0040
6	ENSG00000252523	RNU6-267P	RNA, U6 small nuclear 267, pseudogene	2.3219	0.0040
7	ENSG00000277900		Metazoan signal recognition particle RNA	2.3219	0.0000
8	ENSG00000264895		novel transcript, sense intronic to MBTD1	2.2264	0.0000
9	ENSG00000224152		novel transcript, antisense to BAZ2B	2.1962	0.0000
10	ENSG00000188394	GPR21	G protein-coupled receptor 21	2.1950	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000230478		glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene	-1.5850	0.0457
63127	ENSG00000230239	PDE4DIPP9	PDE4DIP pseudogene 9	-1.5850	1.0000
63126	ENSG00000230189		RAB guanine nucleotide exchange factor 1 (RABGEF1) pseudogene	-1.5850	0.5781
63125	ENSG00000229733		NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene	-1.5850	1.0000
63124	ENSG00000229104	YY1P2	YY1 transcription factor pseudogene 2	-1.5850	0.5781
63123	ENSG00000229051	LINC01788	long intergenic non-protein coding RNA 1788	-1.5850	0.5781
63122	ENSG00000228507	DAP3P2	death associated protein 3 pseudogene 2	-1.5850	1.0000
63121	ENSG00000227988	TDGF1P1	teratocarcinoma-derived growth factor 1 pseudogene 1	-1.5850	0.0457
63120	ENSG00000227514		ribosomal protein L18 (RPL18) pseudogene	-1.5850	1.0000
63119	ENSG00000226847	PRPS1P1	phosphoribosyl pyrophosphate synthetase 1 pseudogene 1	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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