Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773515
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773515
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M142
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000234152
ELOBP1
elongin B pseudogene 1
2.8074
0.0003
2
ENSG00000229871
RPSAP20
ribosomal protein SA pseudogene 20
2.5850
0.0000
3
ENSG00000254830
novel transcript
2.5850
0.0000
4
ENSG00000229937
PRPS1L1
phosphoribosyl pyrophosphate synthetase 1 like 1
2.3219
0.0040
5
ENSG00000242119
pseudogene similar to part of zinc and ring finger 1 ZNRF1
2.3219
0.0040
6
ENSG00000252523
RNU6-267P
RNA, U6 small nuclear 267, pseudogene
2.3219
0.0040
7
ENSG00000277900
Metazoan signal recognition particle RNA
2.3219
0.0000
8
ENSG00000264895
novel transcript, sense intronic to MBTD1
2.2264
0.0000
9
ENSG00000224152
novel transcript, antisense to BAZ2B
2.1962
0.0000
10
ENSG00000188394
GPR21
G protein-coupled receptor 21
2.1950
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000230478
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene
-1.5850
0.0457
63127
ENSG00000230239
PDE4DIPP9
PDE4DIP pseudogene 9
-1.5850
1.0000
63126
ENSG00000230189
RAB guanine nucleotide exchange factor 1 (RABGEF1) pseudogene
-1.5850
0.5781
63125
ENSG00000229733
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene
-1.5850
1.0000
63124
ENSG00000229104
YY1P2
YY1 transcription factor pseudogene 2
-1.5850
0.5781
63123
ENSG00000229051
LINC01788
long intergenic non-protein coding RNA 1788
-1.5850
0.5781
63122
ENSG00000228507
DAP3P2
death associated protein 3 pseudogene 2
-1.5850
1.0000
63121
ENSG00000227988
TDGF1P1
teratocarcinoma-derived growth factor 1 pseudogene 1
-1.5850
0.0457
63120
ENSG00000227514
ribosomal protein L18 (RPL18) pseudogene
-1.5850
1.0000
63119
ENSG00000226847
PRPS1P1
phosphoribosyl pyrophosphate synthetase 1 pseudogene 1
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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