SHOGoiN Cell Methylome: GSM2773515
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773515 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M142 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000234152 | ELOBP1 | elongin B pseudogene 1 | 2.8074 | 0.0003 |
| 2 | ENSG00000229871 | RPSAP20 | ribosomal protein SA pseudogene 20 | 2.5850 | 0.0000 |
| 3 | ENSG00000254830 | novel transcript | 2.5850 | 0.0000 | |
| 4 | ENSG00000229937 | PRPS1L1 | phosphoribosyl pyrophosphate synthetase 1 like 1 | 2.3219 | 0.0040 |
| 5 | ENSG00000242119 | pseudogene similar to part of zinc and ring finger 1 ZNRF1 | 2.3219 | 0.0040 | |
| 6 | ENSG00000252523 | RNU6-267P | RNA, U6 small nuclear 267, pseudogene | 2.3219 | 0.0040 |
| 7 | ENSG00000277900 | NA | 2.3219 | 0.0000 | |
| 8 | ENSG00000264895 | novel transcript, sense intronic to MBTD1 | 2.2264 | 0.0000 | |
| 9 | ENSG00000224152 | novel transcript, antisense to BAZ2B | 2.1962 | 0.0000 | |
| 10 | ENSG00000188394 | GPR21 | G protein-coupled receptor 21 | 2.1950 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000213888 | LINC01521 | long intergenic non-protein coding RNA 1521 | -1.6173 | 0.0000 |
| 63340 | ENSG00000215512 | ankyrin repeat domain 30A (ANKRD30A) pseudogene | -1.6170 | 0.0025 | |
| 63339 | ENSG00000266754 | RN7SL524P | RNA, 7SL, cytoplasmic 524, pseudogene | -1.6168 | 0.0000 |
| 63338 | ENSG00000133134 | BEX2 | brain expressed X-linked 2 | -1.6162 | 0.0000 |
| 63337 | ENSG00000236080 | YAP1P2 | Yes associated protein 1 pseudogene 2 | -1.6162 | 0.0000 |
| 63336 | ENSG00000183735 | TBK1 | TANK binding kinase 1 | -1.6158 | 0.0000 |
| 63335 | ENSG00000128310 | GALR3 | galanin receptor 3 | -1.6158 | 0.0000 |
| 63334 | ENSG00000180543 | TSPYL5 | TSPY like 5 | -1.6151 | 0.0000 |
| 63333 | ENSG00000207408 | NA | -1.6147 | 0.0000 | |
| 63332 | ENSG00000278957 | TEC | -1.6144 | 0.0000 |
