Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773515

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773515


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M142Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234152 ELOBP1 elongin B pseudogene 1 2.8074 0.0003
2 ENSG00000229871 RPSAP20 ribosomal protein SA pseudogene 20 2.5850 0.0000
3 ENSG00000254830 novel transcript 2.5850 0.0000
4 ENSG00000229937 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1 like 1 2.3219 0.0040
5 ENSG00000242119 pseudogene similar to part of zinc and ring finger 1 ZNRF1 2.3219 0.0040
6 ENSG00000252523 RNU6-267P RNA, U6 small nuclear 267, pseudogene 2.3219 0.0040
7 ENSG00000277900 Metazoan signal recognition particle RNA 2.3219 0.0000
8 ENSG00000264895 novel transcript, sense intronic to MBTD1 2.2264 0.0000
9 ENSG00000224152 novel transcript, antisense to BAZ2B 2.1962 0.0000
10 ENSG00000188394 GPR21 G protein-coupled receptor 21 2.1950 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000230478 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene -1.5850 0.0457
63127 ENSG00000230239 PDE4DIPP9 PDE4DIP pseudogene 9 -1.5850 1.0000
63126 ENSG00000230189 RAB guanine nucleotide exchange factor 1 (RABGEF1) pseudogene -1.5850 0.5781
63125 ENSG00000229733 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4) pseudogene -1.5850 1.0000
63124 ENSG00000229104 YY1P2 YY1 transcription factor pseudogene 2 -1.5850 0.5781
63123 ENSG00000229051 LINC01788 long intergenic non-protein coding RNA 1788 -1.5850 0.5781
63122 ENSG00000228507 DAP3P2 death associated protein 3 pseudogene 2 -1.5850 1.0000
63121 ENSG00000227988 TDGF1P1 teratocarcinoma-derived growth factor 1 pseudogene 1 -1.5850 0.0457
63120 ENSG00000227514 ribosomal protein L18 (RPL18) pseudogene -1.5850 1.0000
63119 ENSG00000226847 PRPS1P1 phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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