SHOGoiN Cell Methylome: GSM2773515

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773515


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M142Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234152 ELOBP1 elongin B pseudogene 1 2.8074 0.0003
2 ENSG00000229871 RPSAP20 ribosomal protein SA pseudogene 20 2.5850 0.0000
3 ENSG00000254830 novel transcript 2.5850 0.0000
4 ENSG00000229937 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1 like 1 2.3219 0.0040
5 ENSG00000242119 pseudogene similar to part of zinc and ring finger 1 ZNRF1 2.3219 0.0040
6 ENSG00000252523 RNU6-267P RNA, U6 small nuclear 267, pseudogene 2.3219 0.0040
7 ENSG00000277900 NA 2.3219 0.0000
8 ENSG00000264895 novel transcript, sense intronic to MBTD1 2.2264 0.0000
9 ENSG00000224152 novel transcript, antisense to BAZ2B 2.1962 0.0000
10 ENSG00000188394 GPR21 G protein-coupled receptor 21 2.1950 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000213888 LINC01521 long intergenic non-protein coding RNA 1521 -1.6173 0.0000
63340 ENSG00000215512 ankyrin repeat domain 30A (ANKRD30A) pseudogene -1.6170 0.0025
63339 ENSG00000266754 RN7SL524P RNA, 7SL, cytoplasmic 524, pseudogene -1.6168 0.0000
63338 ENSG00000133134 BEX2 brain expressed X-linked 2 -1.6162 0.0000
63337 ENSG00000236080 YAP1P2 Yes associated protein 1 pseudogene 2 -1.6162 0.0000
63336 ENSG00000183735 TBK1 TANK binding kinase 1 -1.6158 0.0000
63335 ENSG00000128310 GALR3 galanin receptor 3 -1.6158 0.0000
63334 ENSG00000180543 TSPYL5 TSPY like 5 -1.6151 0.0000
63333 ENSG00000207408 NA -1.6147 0.0000
63332 ENSG00000278957 TEC -1.6144 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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