Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773516

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773516


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M143Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206847 Y RNA 3.0000 0.0000
2 ENSG00000259117 WD repeat and SOCS box containing 2 (WSB2) pseudogene 2.8074 0.0003
3 ENSG00000201228 Y RNA 2.5850 0.0010
4 ENSG00000256826 ATP5MFP4 ATP synthase membrane subunit f pseudogene 4 2.5850 0.0010
5 ENSG00000239435 KCNMB3P1 KCNMB3 pseudogene 1 2.4973 0.0000
6 ENSG00000271793 novel protein, SYNCRIP-SNX14 readthrough 2.4680 0.0000
7 ENSG00000155890 TRIM42 tripartite motif containing 42 2.3219 0.0000
8 ENSG00000225912 RPL26P36 ribosomal protein L26 pseudogene 36 2.3219 0.0000
9 ENSG00000238004 novel transcript 2.3219 0.0041
10 ENSG00000254705 novel transcript 2.3219 0.0041

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000232032 novel pseudogene -1.5200 0.0104
63127 ENSG00000224040 HMGN1P4 high mobility group nucleosome binding domain 1 pseudogene 4 -1.5200 0.0104
63126 ENSG00000264464 LINC02837 long intergenic non-protein coding RNA 2837 -1.5198 0.0000
63125 ENSG00000261208 novel Pumilio domain-containing protein KIAA0020 pseudogene -1.5196 0.0010
63124 ENSG00000184261 KCNK12 potassium two pore domain channel subfamily K member 12 -1.5193 0.0000
63123 ENSG00000266174 MIR4666A microRNA 4666a -1.5192 0.0000
63121 ENSG00000227604 TOMM22P3 TOMM22 pseudogene 3 -1.5189 0.0003
63120 ENSG00000162975 KCNF1 potassium voltage-gated channel modifier subfamily F member 1 -1.5185 0.0000
63119 ENSG00000281706 long intergenic non-protein coding RNA 1012 -1.5183 0.0000
10 ENSG00000254705 novel transcript 2.3219 0.0041

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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