SHOGoiN Cell Methylome: GSM2773516

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773516


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M143Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206847 NA 3.0000 0.0000
2 ENSG00000259117 WD repeat and SOCS box containing 2 (WSB2) pseudogene 2.8074 0.0003
3 ENSG00000201228 NA 2.5850 0.0010
4 ENSG00000256826 ATP5MFP4 ATP synthase membrane subunit f pseudogene 4 2.5850 0.0010
5 ENSG00000239435 KCNMB3P1 potassium calcium-activated channel subfamily M regulatory beta subunit 3 pseudogene 1 2.4973 0.0000
6 ENSG00000271793 novel protein, SYNCRIP-SNX14 readthrough 2.4680 0.0000
7 ENSG00000155890 TRIM42 tripartite motif containing 42 2.3219 0.0000
8 ENSG00000225912 ribosomal protein L26 (RPL26) pseudogene 2.3219 0.0000
9 ENSG00000238004 novel transcript 2.3219 0.0041
10 ENSG00000254705 novel transcript 2.3219 0.0041

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000215875 ST13P20 ST13, Hsp70 interacting protein pseudogene 20 -1.5850 0.0454
63340 ENSG00000215037 VENTXP2 VENT homeobox pseudogene 2 -1.5850 0.2151
63339 ENSG00000214681 IQCF5 IQ motif containing F5 -1.5850 1.0000
63338 ENSG00000213526 SETP8 SET pseudogene 8 -1.5850 1.0000
63337 ENSG00000213368 ST13P11 ST13, Hsp70 interacting protein pseudogene 11 -1.5850 0.5782
63336 ENSG00000213067 insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) pseudogene -1.5850 0.0279
63335 ENSG00000212490 NA -1.5850 0.0279
63334 ENSG00000212466 RNU6-952P RNA, U6 small nuclear 952, pseudogene -1.5850 0.0175
63333 ENSG00000212384 SNORD113-2 small nucleolar RNA, C/D box 113-2 -1.5850 0.3480
63332 ENSG00000212205 NA -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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