SHOGoiN Cell Methylome: GSM2773517
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773517 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M144 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000222880 | RN7SKP261 | RN7SK pseudogene 261 | 2.5850 | 0.0000 |
| 2 | ENSG00000270708 | GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene | 2.5850 | 0.0000 | |
| 3 | ENSG00000239808 | RN7SL255P | RNA, 7SL, cytoplasmic 255, pseudogene | 2.3821 | 0.0000 |
| 4 | ENSG00000279780 | novel transcript | 2.3510 | 0.0000 | |
| 5 | ENSG00000279795 | novel transcript | 2.3510 | 0.0000 | |
| 6 | ENSG00000224059 | HSPA8P16 | heat shock protein family A (Hsp70) member 8 pseudogene 16 | 2.3219 | 0.0019 |
| 7 | ENSG00000227418 | PCGEM1 | PCGEM1 prostate-specific transcript | 2.3219 | 0.0019 |
| 8 | ENSG00000233774 | MED14P1 | mediator complex subunit 14 pseudogene 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000249425 | LINC02477 | long intergenic non-protein coding RNA 2477 | 2.3219 | 0.0000 |
| 10 | ENSG00000251951 | RN7SKP34 | RN7SK pseudogene 34 | 2.3219 | 0.0019 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000143921 | ABCG8 | ATP binding cassette subfamily G member 8 | -2.0481 | 0.0000 |
| 63340 | ENSG00000263305 | novel transcript | -2.0474 | 0.0000 | |
| 63339 | ENSG00000235192 | novel transcript | -2.0471 | 0.0000 | |
| 63338 | ENSG00000260634 | novel transcript | -2.0467 | 0.0000 | |
| 63337 | ENSG00000140323 | DISP2 | dispatched RND transporter family member 2 | -2.0467 | 0.0000 |
| 63336 | ENSG00000162873 | KLHDC8A | kelch domain containing 8A | -2.0465 | 0.0000 |
| 63335 | ENSG00000177476 | OR2G3 | olfactory receptor family 2 subfamily G member 3 | -2.0465 | 0.0001 |
| 63334 | ENSG00000175093 | SPSB4 | splA/ryanodine receptor domain and SOCS box containing 4 | -2.0465 | 0.0000 |
| 63333 | ENSG00000198932 | GPRASP1 | G protein-coupled receptor associated sorting protein 1 | -2.0463 | 0.0000 |
| 63332 | ENSG00000153165 | RGPD3 | RANBP2 like and GRIP domain containing 3 | -2.0463 | 0.0000 |
