Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773517

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773517 Profile download	7010000000000000000000-773	Sequence Read Archive	SRP074598	SRP074598_M144	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Morula	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000222880	RN7SKP261	RN7SK pseudogene 261	2.5850	0.0000
2	ENSG00000270708		GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene	2.5850	0.0000
3	ENSG00000239808	RN7SL255P	RNA, 7SL, cytoplasmic 255, pseudogene	2.3821	0.0000
4	ENSG00000279780		novel transcript	2.3510	0.0000
5	ENSG00000279795		novel transcript	2.3510	0.0000
6	ENSG00000224059	HSPA8P16	heat shock protein family A (Hsp70) member 8 pseudogene 16	2.3219	0.0019
7	ENSG00000227418	PCGEM1	PCGEM1 prostate-specific transcript	2.3219	0.0019
8	ENSG00000233774	MED14P1	mediator complex subunit 14 pseudogene 1	2.3219	0.0000
9	ENSG00000249425	LINC02477	long intergenic non-protein coding RNA 2477	2.3219	0.0000
10	ENSG00000251951	RN7SKP34	RN7SK pseudogene 34	2.3219	0.0019

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000261375		golgin subfamily A member 6-like pseudogene	-1.9897	0.0000
63127	ENSG00000255362	LINC02761	long intergenic non-protein coding RNA 2761	-1.9896	0.0000
63126	ENSG00000184731	FAM110C	family with sequence similarity 110 member C	-1.9896	0.0000
63125	ENSG00000143933	CALM2	calmodulin 2	-1.9895	0.0000
63124	ENSG00000241560	ZBTB20-AS1	ZBTB20 antisense RNA 1	-1.9894	0.0000
63123	ENSG00000260889	CKBP1	creatine kinase B pseudogene 1	-1.9891	0.0000
63122	ENSG00000075388	FGF4	fibroblast growth factor 4	-1.9891	0.0000
63121	ENSG00000259565	KRT8P23	keratin 8 pseudogene 23	-1.9886	0.0000
63120	ENSG00000152952	PLOD2	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	-1.9886	0.0000
63119	ENSG00000087494	PTHLH	parathyroid hormone like hormone	-1.9882	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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