Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773517

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773517


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M144Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222880 RN7SKP261 RN7SK pseudogene 261 2.5850 0.0000
2 ENSG00000270708 GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene 2.5850 0.0000
3 ENSG00000239808 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene 2.3821 0.0000
4 ENSG00000279780 novel transcript 2.3510 0.0000
5 ENSG00000279795 novel transcript 2.3510 0.0000
6 ENSG00000224059 HSPA8P16 heat shock protein family A (Hsp70) member 8 pseudogene 16 2.3219 0.0019
7 ENSG00000227418 PCGEM1 PCGEM1 prostate-specific transcript 2.3219 0.0019
8 ENSG00000233774 MED14P1 mediator complex subunit 14 pseudogene 1 2.3219 0.0000
9 ENSG00000249425 LINC02477 long intergenic non-protein coding RNA 2477 2.3219 0.0000
10 ENSG00000251951 RN7SKP34 RN7SK pseudogene 34 2.3219 0.0019

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000261375 golgin subfamily A member 6-like pseudogene -1.9897 0.0000
63127 ENSG00000255362 LINC02761 long intergenic non-protein coding RNA 2761 -1.9896 0.0000
63126 ENSG00000184731 FAM110C family with sequence similarity 110 member C -1.9896 0.0000
63125 ENSG00000143933 CALM2 calmodulin 2 -1.9895 0.0000
63124 ENSG00000241560 ZBTB20-AS1 ZBTB20 antisense RNA 1 -1.9894 0.0000
63123 ENSG00000260889 CKBP1 creatine kinase B pseudogene 1 -1.9891 0.0000
63122 ENSG00000075388 FGF4 fibroblast growth factor 4 -1.9891 0.0000
63121 ENSG00000259565 KRT8P23 keratin 8 pseudogene 23 -1.9886 0.0000
63120 ENSG00000152952 PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 -1.9886 0.0000
63119 ENSG00000087494 PTHLH parathyroid hormone like hormone -1.9882 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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