Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773517
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773517
Profile download
7010000000000000000000-773
Sequence Read Archive
SRP074598
SRP074598_M144
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Morula
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000222880
RN7SKP261
RN7SK pseudogene 261
2.5850
0.0000
2
ENSG00000270708
GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene
2.5850
0.0000
3
ENSG00000239808
RN7SL255P
RNA, 7SL, cytoplasmic 255, pseudogene
2.3821
0.0000
4
ENSG00000279780
novel transcript
2.3510
0.0000
5
ENSG00000279795
novel transcript
2.3510
0.0000
6
ENSG00000224059
HSPA8P16
heat shock protein family A (Hsp70) member 8 pseudogene 16
2.3219
0.0019
7
ENSG00000227418
PCGEM1
PCGEM1 prostate-specific transcript
2.3219
0.0019
8
ENSG00000233774
MED14P1
mediator complex subunit 14 pseudogene 1
2.3219
0.0000
9
ENSG00000249425
LINC02477
long intergenic non-protein coding RNA 2477
2.3219
0.0000
10
ENSG00000251951
RN7SKP34
RN7SK pseudogene 34
2.3219
0.0019
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000261375
golgin subfamily A member 6-like pseudogene
-1.9897
0.0000
63127
ENSG00000255362
LINC02761
long intergenic non-protein coding RNA 2761
-1.9896
0.0000
63126
ENSG00000184731
FAM110C
family with sequence similarity 110 member C
-1.9896
0.0000
63125
ENSG00000143933
CALM2
calmodulin 2
-1.9895
0.0000
63124
ENSG00000241560
ZBTB20-AS1
ZBTB20 antisense RNA 1
-1.9894
0.0000
63123
ENSG00000260889
CKBP1
creatine kinase B pseudogene 1
-1.9891
0.0000
63122
ENSG00000075388
FGF4
fibroblast growth factor 4
-1.9891
0.0000
63121
ENSG00000259565
KRT8P23
keratin 8 pseudogene 23
-1.9886
0.0000
63120
ENSG00000152952
PLOD2
procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
-1.9886
0.0000
63119
ENSG00000087494
PTHLH
parathyroid hormone like hormone
-1.9882
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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