SHOGoiN Cell Methylome: GSM2773518
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773518 Profile download | 7010000000000000000000-773 | Sequence Read Archive | SRP074598 | SRP074598_M145 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Morula | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000248639 | UDP glucuronos...yltransferase 2 family, polypeptide B4 (UGT2B4) pseudogene | 3.4594 | 0.0000 | |
| 4 | ENSG00000280379 | novel transcript | 2.7429 | 0.0000 | |
| 5 | ENSG00000207957 | MIR105-1 | microRNA 105-1 | 2.6462 | 0.0000 |
| 6 | ENSG00000211583 | MIR767 | microRNA 767 | 2.6462 | 0.0000 |
| 7 | ENSG00000236861 | novel transcript | 2.6455 | 0.0000 | |
| 8 | ENSG00000183909 | OR4G2P | olfactory receptor family 4 subfamily G member 2 pseudogene | 2.6103 | 0.0000 |
| 9 | ENSG00000248195 | novel transcript | 2.5850 | 0.0009 | |
| 10 | ENSG00000279530 | TEC | 2.5850 | 0.0009 | |
| 63332 | ENSG00000220908 | LINC02531 | long intergenic non-protein coding RNA 2531 | -2.3246 | 0.0000 |
| 63333 | ENSG00000119335 | SET | SET nuclear proto-oncogene | -2.3249 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000187140 | FOXD3 | forkhead box D3 | -2.3264 | 0.0000 |
| 63340 | ENSG00000163935 | SFMBT1 | Scm like with four mbt domains 1 | -2.3264 | 0.0000 |
| 63339 | ENSG00000162415 | ZSWIM5 | zinc finger SWIM-type containing 5 | -2.3261 | 0.0000 |
| 63338 | ENSG00000283480 | novel transcript, antisense to SOX4 | -2.3257 | 0.0000 | |
| 63337 | ENSG00000177606 | JUN | Jun proto-oncogene, AP-1 transcription factor subunit | -2.3257 | 0.0000 |
| 63336 | ENSG00000198984 | MIR345 | microRNA 345 | -2.3256 | 0.0000 |
| 63335 | ENSG00000186297 | GABRA5 | gamma-aminobutyric acid type A receptor alpha5 subunit | -2.3255 | 0.0000 |
| 63334 | ENSG00000258429 | peptide deformylase, mitochondrial | -2.3249 | 0.0000 | |
| 63333 | ENSG00000119335 | SET | SET nuclear proto-oncogene | -2.3249 | 0.0000 |
| 63332 | ENSG00000220908 | LINC02531 | long intergenic non-protein coding RNA 2531 | -2.3246 | 0.0000 |
