SHOGoiN Cell Methylome: GSM2773518

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773518


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M145Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248639 UDP glucuronos...yltransferase 2 family, polypeptide B4 (UGT2B4) pseudogene 3.4594 0.0000
4 ENSG00000280379 novel transcript 2.7429 0.0000
5 ENSG00000207957 MIR105-1 microRNA 105-1 2.6462 0.0000
6 ENSG00000211583 MIR767 microRNA 767 2.6462 0.0000
7 ENSG00000236861 novel transcript 2.6455 0.0000
8 ENSG00000183909 OR4G2P olfactory receptor family 4 subfamily G member 2 pseudogene 2.6103 0.0000
9 ENSG00000248195 novel transcript 2.5850 0.0009
10 ENSG00000279530 TEC 2.5850 0.0009
63332 ENSG00000220908 LINC02531 long intergenic non-protein coding RNA 2531 -2.3246 0.0000
63333 ENSG00000119335 SET SET nuclear proto-oncogene -2.3249 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000187140 FOXD3 forkhead box D3 -2.3264 0.0000
63340 ENSG00000163935 SFMBT1 Scm like with four mbt domains 1 -2.3264 0.0000
63339 ENSG00000162415 ZSWIM5 zinc finger SWIM-type containing 5 -2.3261 0.0000
63338 ENSG00000283480 novel transcript, antisense to SOX4 -2.3257 0.0000
63337 ENSG00000177606 JUN Jun proto-oncogene, AP-1 transcription factor subunit -2.3257 0.0000
63336 ENSG00000198984 MIR345 microRNA 345 -2.3256 0.0000
63335 ENSG00000186297 GABRA5 gamma-aminobutyric acid type A receptor alpha5 subunit -2.3255 0.0000
63334 ENSG00000258429 PDF peptide deformylase, mitochondrial -2.3249 0.0000
63333 ENSG00000119335 SET SET nuclear proto-oncogene -2.3249 0.0000
63332 ENSG00000220908 LINC02531 long intergenic non-protein coding RNA 2531 -2.3246 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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