Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773519

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773519


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7010000000000000000000-773Sequence Read ArchiveSRP074598SRP074598_M146Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMorulaHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231841 FAM192BP family with sequence similarity 192 member B, pseudogene 3.1699 0.0000
2 ENSG00000278206 novel transcript 3.0542 0.0000
3 ENSG00000207653 MIR558 microRNA 558 2.8074 0.0000
4 ENSG00000232916 HMGN2P27 high mobility group nucleosomal binding domain 2 pseudogene 27 2.5850 0.0006
5 ENSG00000227240 novel transcript 2.5480 0.0000
6 ENSG00000251889 RNU4-49P RNA, U4 small nuclear 49, pseudogene 2.4183 0.0000
7 ENSG00000183395 PMCH pro-melanin concentrating hormone 2.4037 0.0000
8 ENSG00000256564 novel transcript 2.4037 0.0000
9 ENSG00000281344 HELLPAR HELLP associated long non-coding RNA 2.4037 0.0000
10 ENSG00000231926 SEPHS1P7 selenophosphate synthetase 1 pseudogene 7 2.3900 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000273567 REXO1L3P REXO1 like 3, pseudogene -2.2687 0.0000
63127 ENSG00000283815 MIR18A microRNA 18a -2.2684 0.0000
63126 ENSG00000124786 SLC35B3 solute carrier family 35 member B3 -2.2682 0.0000
63124 ENSG00000235204 novel transcript -2.2672 0.0000
63123 ENSG00000233008 LINC01725 long intergenic non-protein coding RNA 1725 -2.2666 0.0000
63122 ENSG00000284536 MIR17 microRNA 17 -2.2664 0.0000
63121 ENSG00000267325 LINC01415 long intergenic non-protein coding RNA 1415 -2.2663 0.0000
63120 ENSG00000145715 RASA1 RAS p21 protein activator 1 -2.2656 0.0000
63119 ENSG00000089692 LAG3 lymphocyte activating 3 -2.2656 0.0000
10 ENSG00000231926 SEPHS1P7 selenophosphate synthetase 1 pseudogene 7 2.3900 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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